ID KC706547; SV 1; circular; genomic DNA; STD; VRL; 2625 BP. XX AC KC706547; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Flo180:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2625 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2625 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; ce9477606aabb05c22b3bdd85d211506. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2625 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo180:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 201..956 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QN46" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QN46" FT /protein_id="AGH29663.1" FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(953..1351) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJC6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJC6" FT /protein_id="AGH29664.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN FT VIRAVRFATDKQYVNAVLENHSIKFKIY" FT CDS complement(1098..1487) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QW87" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QW87" FT /protein_id="AGH29666.1" FT /translation="MHNSSSSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1429..2484) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ64" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ64" FT /protein_id="AGH29665.1" FT /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPNRSAHFHPNIQGAKSSSDVKSYV FT EKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADDYFGRDAAARPERPISIIIEG FT DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN FT SPLYQSSTSGC" FT CDS complement(2034..2327) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLJ2" FT /protein_id="AGH29662.1" FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQIGQHISIQTYRELRAR FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2625 BP; 691 A; 553 C; 600 G; 781 T; 0 other; accggatggc cgcgcgattt tttttaaggc ccattcagtt tgggccgctc ttttgggccc 60 ttcaccttta attttaatga aagtaaattt ggcccaatca tgatgcatct gacaagctaa 120 gaatatttac aactacttaa cgcccaagtt gcataacggc tataaattaa acgtgcatat 180 gtcgttaact ttaattcaaa atgcctaagc gcgatgcccc atggcgccac atggctagta 240 cagttaagat tagccggggc gttaatagtt ctcctcgagc aggagttggg ccacggtcta 300 acaaggcctc tgactgggta aacaggccca tgtacaggaa gcccaagata tatcggatgt 360 atagaacacc cgatgttcca agaggttgtg aaggcccatg taaagtccaa tcgtttgaac 420 agcgtcacga tatctcccat actggtaaag tgatatgcgt ctccgatgtc acccgtggta 480 acggtattac acatcgtgtg ggtaagcgtt tctgtgttaa gtctgtgtat attctgggta 540 agatatggat ggatgagaac atcaagttga agaaccacac gaacagtgcc atgttttggt 600 tggtcaggga ccgtagaccg tatggcaccc ctatggactt tggccaggtg tttaacatgt 660 tcgacaacga gcctagcacc gccactgtga aaaacgatct ccgtgatcgt tttcaagtta 720 tgcacaagtt ctatgctaag gtcacaggtg gacaatacgc aagcaacgag caggcgcttg 780 tcaagcggtt ctggaaggtc aacaatcatg tcgtctataa ccatcaagaa gccggaaagt 840 acgagaatca tacggagaac gccctgttat tgtatatggc atgtactcat gcctcaaacc 900 ccgtgtatgc aactttaaaa attcggatct atttttatga ttcgataaca aattaataaa 960 ttttgaattt tattgaatga ttctcgagta cagcatttac atattgtttg tctgtggcga 1020 agcgtacagc tctaattaca ttattaactg aaataacgcc tagctgatca atgtacaaca 1080 taactaaata tttaaatcta tttaaatatg tcatcccaga agctctcagg gatgtcgtcc 1140 agatttggaa gttgagataa gccttgtgga gacccagtac tctcctcagg ttgtggttga 1200 accgtatttg gacgtggtag actctggtcc tcgtgtatag tatgtcctcg acgttgtaca 1260 tcttgaaata aaggggattt gatatttccc aagtatacac gccattctct gcctgatgtg 1320 cagtgatgag ttcccctgtg cgtgaatcca tgtcctgcgc aatctatgtg tacgaaaatg 1380 gagcagccgc actgtaaatc aattcgtctt cttcgtatag ctctcttctt agcagcccga 1440 tgttgaactt tgatagaggg gggagttgag gaagatgaat tgtgcattgt gctttgtcca 1500 actacttaat gctgagtttt catccttgtc gaggaaacat ttatagctgg ccccctcgcc 1560 aggattgcag agcacgatgc atgggatacc acctttaatt tgaactggct ttccgtattt 1620 acagtttgat tgccaatcct tttgggcccc aatcaattct ttccagtgct ttaactttag 1680 atagtgcggt gcgacatcat caatgacgtt atactgcaca tcgtttgagt agacctttga 1740 attgaaatcg aggtgaccac tcaagtaatt atgggaccct aatgcacgtg accacatcgt 1800 tttgccactt cgagaatcac cctcgattat tatactgata ggtctctccg gccgcgcagc 1860 ggcatctctc ccgaaatagt catctgccca atcttgcatc tcgacaggca cgttagtgaa 1920 cgacgagagt ggaaacggag gaacccaagg ttctggagcc tttgcgaaaa tacgctctaa 1980 atttgaccta atgttatgat gttgaagcac gaaatctttg ggttgttcct cccttaatat 2040 attgagtgct tccatgacag atcctgcgtt gagaaccttg gcgtacgtgt cgttggcaga 2100 ttgctgacct cctctagttg atctgccatc gatctggaaa actccatgat caacgaagtc 2160 tccgtctttt tccacgtatg atttgacatc tgacgagctc ttagctccct gtatgtttgg 2220 atggaaatgt gctgacctat ttggggagac gaggtcgaag aacttgttat ttttgcagtt 2280 gtattttcct tcgaattgga tgagcacgtg gagatgaggt tgcccatctt cgtgtagttc 2340 tctcgagaca cgaatgaata atttattagt tggtgtgttt agggctaata attgggaaag 2400 tgcttcttct ttggaaagag aacagtgtgg atatgtcaga aaataatttt tggaatttac 2460 tcggaaatgt ctgggcggtg gcatatttgt aataatagtt gggcaccgat tggggactct 2520 ctaaacttgc tctagcaatt ggggactggg gtcctatata tactagaacc ctctatagaa 2580 ctttcaatct cgttcacaca cgtggcggcc atcctatata atatt 2625 //