ID KC706540; SV 1; circular; genomic DNA; STD; VRL; 2623 BP. XX AC KC706540; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Car219.3:08 segment DNA-A, DE complete sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2623 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2623 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; f291eccb197f518ed34ceef11a17cbd3. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2623 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Car219.3:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 199..954 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QMZ6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QMZ6" FT /protein_id="AGH29628.1" FT /translation="MPKRDAPWRHMASTVKISRGVNNSPRSGVGPRSNKASDWVNRPMY FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(951..1349) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJA4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJA4" FT /protein_id="AGH29629.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN FT VIRAVRFTTDKQYVNAVLENHSIKFKIY" FT CDS complement(1096..1485) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QW80" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QW80" FT /protein_id="AGH29631.1" FT /translation="MHNSSSSTPPSIKVQHRAAKKRAVRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPCPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1427..2482) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ32" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ32" FT /protein_id="AGH29630.1" FT /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQILALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV FT EKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADDYFGRDAAARPERPISIIIEG FT DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKNENSALSSWTKHNAQFIFLN FT SPLYQSSTSGC" FT CDS complement(2032..2325) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLK0" FT /protein_id="AGH29627.1" FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2623 BP; 692 A; 553 C; 592 G; 786 T; 0 other; accggatggc cgcgcgattt tttttaaggc ccattcagtt tgggccgctc ttttgggcct 60 tcacctttaa ttttaatgaa agtaaatttg gcccaatcat gatacatctg acaagctaag 120 atatttacaa ctacttaacg cccaagttgc ataacggcta taaattacac gtgcatatgt 180 cgttaacttt aattcaaaat gcctaagcgc gatgccccat ggcgccacat ggctagtaca 240 gttaagatta gccggggcgt taataattct cctcgctcag gagttgggcc acggtctaac 300 aaggcctctg actgggtaaa caggcccatg tacaggaagc ccaagatata tcggatgtat 360 agaacacccg atgttccaag aggttgtgaa ggcccatgta aagtccaatc gtttgaacag 420 cgtcacgata tctcccatac tggtaaggtg atttgcgtct ccgatgtcac ccgtggtaac 480 ggtattacac atcgtgttgg taagcgtttc tgtgttaagt ctgtgtatat tctgggtaag 540 atatggatgg atgagaacat caagttgaag aaccacacga acagtgccat gttttggttg 600 gtcagggacc gtagaccgta tggcacccct atggactttg gccaggtgtt taacatgttc 660 gacaacgagc ctagcaccgc cactgtgaaa aacgatctcc gtgatcgttt tcaagttatg 720 cacaagttct atgctaaggt cacaggtgga caatacgcaa gcaacgagca ggcgcttgtc 780 aagcggttct ggaaggtcaa caatcatgtc gtctataacc atcaagaagc cggaaagtac 840 gagaatcata cagagaacgc cctgttattg tatatggcat gtactcatgc ctcaaacccc 900 gtgtatgcaa ctttaaaaat tcggatctat ttttatgatt cgataacaaa ttaataaatt 960 ttgaatttta ttgaatgatt ctcgagtaca gcatttacat attgtttgtc tgtggtgaag 1020 cgtacagctc taattacatt attaactgaa ataacgccta gctgatcaat gtacaacata 1080 actaaatatt taaatctatt taaatatgtc atcccagaag ctctcaggga tgtcgtccag 1140 atttggaagt tgagataagc cttgtggaga cccagtactc tcctcaggtt gtggttgaac 1200 cgtatttgga catggtagac tctggtcctc gtgtatagta tgtcctcgac gttgtacatc 1260 ttgaaataaa ggggatttga tatttcccaa gtatacacgc cattctctgc ctgatgtgca 1320 gtgatgagtt cccctgtgcg tgaatccatg tcctgcgcaa tctatgtgta cgaaaatgga 1380 gcagccgcac tgtaaatcaa ttcgtcttct tcgtacagct ctcttcttag cagcccgatg 1440 ttgaactttg atagaggggg gagttgagga agatgaattg tgcattgtgt tttgtccaac 1500 tacttaatgc tgagttttca tttttgtcga ggaaacattt atagctggcc ccctcgccag 1560 gattgcaaag cacgatgcat gggataccac ctttaatttg aactggcttt ccgtatttac 1620 agtttgattg ccaatccttt tgggccccaa tcaattcttt ccagtgcttt aactttagat 1680 agtgcggtgc gacatcatca atgacgttat actgcacatc gtttgagtag acctttgaat 1740 tgaaatcgag gtgaccactc aagtaattat gggaccctaa tgcacgtgac cacatcgttt 1800 tgccacttcg agaatcaccc tcgattatta tactgatagg tctctccggc cgcgcagcgg 1860 catctctccc gaaatagtca tctgcccaat cttgcatctc gacaggcacg ttagtgaacg 1920 acgagagtgg aaacggagga acccaaggtt ctggagcctt tgcgaaaata cgctctaaat 1980 ttgacctaat gttatgatgt tgaagcacga aatctttggg ttgttcctcc cttaatatat 2040 tgagtgcttc catgacagat cctgcgttga gaaccttggc gtacgtgtcg ttggcagatt 2100 gctgacctcc tctagctgat ctgccatcga tctggaaaac tccatgatca acgaagtctc 2160 cgtctttttc cacgtatgat ttgacatctg acgagctctt agctccctgt atgtttggat 2220 ggaaatgtgc tgacctactt ggggagacga ggtcgaagaa cttgttattt ttgcagttgt 2280 attttccttc gaattggatg agcacgtgga gatgaggttg cccatcttcg tgtagttctc 2340 tcgagacacg aatgaataat ttattagttg gtgtgtttaa agctaatatt tgggaaagtg 2400 cttcttcttt ggaaagagaa cagtgtggat atgtcagaaa ataatttttg gaatttactc 2460 ggaaatgtct gggcggtggc atatttgtaa taatagttgg gcaccgattg gggactctct 2520 aaacttgctc tagcaattgg ggactggggt cctatatata ctagaaccct ctatagaact 2580 ttcaatctcg ttcacacacg tggcggccat cctatataat att 2623 //