ID KC706537; SV 1; circular; genomic DNA; STD; VRL; 2675 BP. XX AC KC706537; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Sida micrantha mosaic virus isolate BR:Pda8:05 segment DNA-A, complete DE sequence. XX KW . XX OS Sida micrantha mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2675 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2675 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (01-MAR-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 91b0e603866b7a4862b5b65fe5512439. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2675 FT /organism="Sida micrantha mosaic virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Pda8:05" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2005" FT /db_xref="taxon:228897" FT CDS 241..1023 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QMX9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QMX9" FT /protein_id="AGH29613.1" FT /translation="MYDVSNYFEMPKRDPSWRQMAGTSKVSRTNNFSPRGGGGPKYNKA FT SEWVHRPMYRKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNG FT ITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMF FT DNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGK FT YENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1020..1418) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJ91" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJ91" FT /protein_id="AGH29614.1" FT /translation="MDSRTGEFITAPQAENGAYIWEITNPLYFKMYNVEDPLYTRTRVY FT HIQIRFNHNLRKALGLHKAYLNFRVWTTSLTASGTTYLIRLRRLVMMYLDQLGVISLNN FT VIRAVRFATDKAYVNYVLEDHDIKFKFY" FT CDS complement(1165..1554) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:C1JL51" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C1JL51" FT /protein_id="AGH29616.1" FT /translation="MLNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGCTIYQHLNCTG FT HGFTHRGIHNCTSGREWRLYLGDNKSPVFQDVQRRGSAVHEDQSVPHTDKVQPQPQESI FT GSPQGLPELPSLDDFSDSFWNDLFD" FT CDS complement(1475..2551) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ19" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ19" FT /protein_id="AGH29615.1" FT /translation="MPPPKRFKISAKNYFLTYPQCSLTKEETLSQLQSLATPVNKKFIK FT ICRELHENGEPHLHVLIQFQGKFQCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEIALQIIREKLPEKFLFQFH FT NLNSNLDRIFAKAPDPWAPPFRLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVEG FT GSRTGKTMWARALGPHNYFSGHLDFNSKVYSDQVEYNVIDDVAPHYLKLKHWKELIGAQ FT QKWQTNCKYGKPRLIEGGVPSIVLCNPGEGVSYKDFLDKEENAALRGWTLHNAKFIFLD FT APLYQTETQDCQEESNQA" FT CDS complement(2137..2400) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLF9" FT /protein_id="AGH29612.1" FT /translation="MKMGSLISTSLSSSRGNSNARITDSSTWYPQPGQHISILTYRELN FT HRPTSSPTSTRTEILSSGENSKSTAEVLEAVARQLTTLPQKP" XX SQ Sequence 2675 BP; 654 A; 615 C; 651 G; 755 T; 0 other; accggatggc cgcgcgattt ttcccccccc cacgtggcgc gctggtggtc gtgcgatctc 60 tctccccccc tctcgcgcga cgtggagctc tggtgtccgc gcgttccccc cgcgcgctct 120 gcctttaatt taaattaaag gaaataactt tcatcaggac caatgaaatt gcgtccttta 180 agcctagata tttgcgaaag acttgggccc taagttgttt gacagctata taattaagtc 240 atgtatgacg tcagtaatta tttcgaaatg cccaagcggg atccctcatg gcgccagatg 300 gcgggaacct caaaggttag ccgcactaac aacttttctc ctcgtggagg tggaggccca 360 aagtacaaca aggcctcgga atgggttcac aggcccatgt ataggaagcc caggatatac 420 aggatgataa ggactcctga tgttccaaga ggctgtgaag ggccttgtaa ggtccagtct 480 tacgagcagc gtcacgacat ctcacatgtc gggaaggtca tgtgcatatc tgatgtcaca 540 cgtggcaacg gcataaccca ccgtgtcggt aagcgtttct gcgttaagtc tgtctacatt 600 ttagggaaga tatggatgga cgagaacatc aagctcaaga accacacgaa cagtgtcatg 660 ttctggttgg tcagagaccg tagaccgtat ggtactccta tggactttgg ccaggtgttc 720 aacatgtttg acaacgagcc cagcactgct acggtgaaga acgatctccg tgatcgttat 780 caagttatgc acaagttcta cgccaaggtc actggtggtc aatatgccag caacgagcag 840 gctctggtca agaggttctg gaaggtcaac aatcatgtgg tgtataacca ccaggaagct 900 ggcaagtatg agaatcacac ggagaatgct ttgttactgt atatggcatg tactcatgcc 960 tctaaccctg tgtatgcaac gcttaagatt cggatctact tctacgattc gataaccaat 1020 taataaaatt tgaattttat atcatgatct tcaagtacat agtttacata ggctttgtca 1080 gtggcaaagc gaacagctct aattacattg ttaagggaaa ttacacctaa ttgatctaag 1140 tacatcatta caaggcgtct aagcctaatc aaataggtcg ttccagaagc tgtcagagaa 1200 gtcgtccaga ctcggaagtt caggtaggcc ttgtggagac ccaatgcttt cctgaggttg 1260 tggttgaacc ttatctgtat gtggtacact ctggtcctcg tgtacagcgg atcctctacg 1320 ttgtacatct tgaaatacag gggatttgtt atctcccaga tataggcgcc attctctgcc 1380 tgaggtgcag ttatgaattc cccggtgcgt gaatccatgg ccggtgcagt tgagatgttg 1440 gtatatggtg cagccgcact ctaggtccac tcgtctacgc ctgattgctc tcttcttggc 1500 aatcctgtgt ctcggtttga tagagggggg cgtcgaggaa gatgaattta gcattgtgta 1560 gtgtccagcc tctcaatgct gcattttcct ctttgtctag gaagtcttta tagctgaccc 1620 cctctccagg attgcatagc acgattgaag ggaccccacc ttcaatcaaa cgaggctttc 1680 cgtacttgca gtttgtctgc catttttgtt gggcccctat gagctctttc cagtgtttca 1740 actttaggta atgcggagcg acgtcatcaa tgacgttata ctccacttga tcagaatata 1800 cctttgagtt gaaatccaga tggccactga agtaattatg tgggcctaat gctctagccc 1860 acatcgtttt acccgttctg ctaccgcctt caacaattaa acttatgggc ctcaatggcc 1920 gcgcagcgga acccctccca aaataatcat cggcccactc ttgcatctcg tctggcacgt 1980 tagtgaatga ggagagtcga aacggagggg cccatggatc cggagccttt gcaaaaatcc 2040 tatctaaatt actatttaga ttgtggaact ggaataagaa cttttccggt aacttctccc 2100 tgattatctg caaagctatc tctttagaag gggcgtttaa ggcttctgcg gcagcgtcgt 2160 tagctgtctg gcaaccgcct ctagcacttc tgccgtcgat ttggaattct ccccactcga 2220 tagtatctcc gtccttgtcg atgtaggact tgacgtcgga cgatgattta gctccctgta 2280 tgttaggatg gaaatgtgtt gacctggttg gggataccag gtcgaagagt ctgttattcg 2340 tgcattggaa tttcccctgg aactggataa ggacgtggag atgaggctcc ccattttcat 2400 ggagctctct gcagattttt atgaacttct tgttaactgg tgttgctaag ctctgcaatt 2460 gggaaagtgt ctcctctttg gttaaggagc actggggata tgtcaagaaa taattctttg 2520 cacttatttt aaaacgcttt ggcggtggca tttttgtaaa taaggggtgt accccaattg 2580 agagctcgct ctataagtca tatgaattgg ggtaatgggg acaatatata gtagaagatc 2640 ctaaggggct ttaagcggcc atccgcacta atatt 2675 //