ID KC706536; SV 1; circular; genomic DNA; STD; VRL; 2675 BP. XX AC KC706536; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Sida micrantha mosaic virus isolate BR:Pda43:05 segment DNA-A, complete DE sequence. XX KW . XX OS Sida micrantha mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2675 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2675 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (01-MAR-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 800183b594f87e3e63de8d21952a746e. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2675 FT /organism="Sida micrantha mosaic virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Pda43:05" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2005" FT /db_xref="taxon:228897" FT CDS 241..1023 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QMX7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QMX7" FT /protein_id="AGH29608.1" FT /translation="MYDVRNYFEMPKRDPSWRQMAGTSKVSRSTNFSPRGGGGPKYNKA FT SEWVHRPMYRKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNG FT ITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMF FT DNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGK FT YENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1020..1418) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJ86" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJ86" FT /protein_id="AGH29609.1" FT /translation="MDSRTGEFITAPQAENGVYIWEITNPLYFRMYNVEDPPFTRTRVY FT HVQIRFNHNLRKALGLHKAYLNFQVWTTSLTASGTIYLIRLRRLVMMYLDQLGVISLNN FT VIRAVRFATDKAYVNYVLEDHDIKFKFY" FT CDS complement(1165..1554) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QW64" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QW64" FT /protein_id="AGH29611.1" FT /translation="MLNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGCTIYQHLNCTG FT HGFTHRGIHNCTSGREWRLYLGDNKSPIFQDVQRRGSAVHADQSVPRTDKVQPQPQESI FT GSPQGLPELPSLDDIPDSFWNDLFD" FT CDS complement(1475..2551) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ15" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ15" FT /protein_id="AGH29610.1" FT /translation="MPPPKRFKISAKNYFLTYPQCSLTKEETLSQLQSLSIPVNKKFIK FT ICRELHENGEPHLHVLIQFQGKFQCTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLAWGEFQIDGRSARGGCQTANDAAAEALNAPSKEVALQIIREKLPEKFLFQFH FT NLNSNLDRIFAKAPEPWAPPFRLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVEG FT GSRTGKTMWARALGPHNYFSGHLDFNSKVYSDQVEYNVIDDVAPHYLKLKHWKELIGAQ FT QKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENAALRGWTLHNAKFIFLD FT APLYQTETQDCQEESNQA" FT CDS complement(2137..2394) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLF5" FT /protein_id="AGH29607.1" FT /translation="MGSLISTSLYSSKGNSNARITDSSTWYPQPGQHISILTYRELNHH FT PTSSPTSTRTEILSRGGNSRSTAEVLEAVARQLTTLPQKP" XX SQ Sequence 2675 BP; 662 A; 617 C; 656 G; 740 T; 0 other; accggatggc cgcgcgattt cccccccccc ccacgtggcg ctctggtggt cgtgcgatct 60 ctctcccccc tctcacgcga cgtggagctc tggtgtccgc gcgttccccc cgcgcgctct 120 gtctttaatt taaattaaag gaaataactt tcatctggac caatgaaatt gtgtctttta 180 agcctagata tttgcgaaag acttgggccc taagttgttt aacatctata taattaagtc 240 atgtatgacg tcaggaatta tttcgaaatg cccaagcggg atccctcatg gcgccagatg 300 gcgggaacct caaaggttag ccgctctacc aacttttctc ctcgtggagg aggaggccca 360 aagtacaaca aggcctcgga atgggttcac aggcccatgt ataggaagcc caggatatac 420 aggatgataa ggactcctga tgttccaaga ggctgtgaag ggccctgtaa ggtccagtcc 480 tacgagcagc gtcacgacat ctcacatgtc gggaaggtca tgtgcatatc tgatgtcaca 540 cgtggcaacg gtataaccca ccgtgtcggt aagcgtttct gcgttaagtc tgtgtacatt 600 ttagggaaga tatggatgga cgagaacatc aagctcaaga accacacgaa cagtgctatg 660 ttctggttgg tcagggacag aagaccgtat ggtaccccga tggattttgg ccaagtgttc 720 aacatgtttg acaacgagcc cagcactgca accgtgaaga acgacctacg tgatcgtttc 780 caggttatgc ataggttcta tgctaaggtc acgggtggac aatatgccag caatgagcag 840 gcgctggtca agcgattctg gagggtcaac aatcatgtgg tctacaacca tcaagaagcc 900 gggaagtatg agaatcacac ggagaacgcc ctgttattgt atatggcatg tactcatgcc 960 tctaaccctg tatatgcaac cttaaaaatt cggatctact tctacgattc gataacaaat 1020 taataaaatt taaattttat atcatgatct tcaagtacat agtttacata ggctttgtca 1080 gtggcaaatc gaacagctct aattacattg ttaagagaaa ttacacctaa ttgatctaag 1140 tacatcatta caaggcgtct aagcctaatc aaataaatcg ttccagaagc tgtcagggat 1200 gtcgtccaga cttggaagtt caggtaggcc ttgtggagac ccaatgcttt cctgaggttg 1260 tggttgaacc ttatctgtac gtggtacact ctggtccgcg tgaacggcgg atcctcgacg 1320 ttgtacatcc tgaaatatag gggatttgtt atctcccaga tatagacgcc attctctgcc 1380 tgaggtgcag ttatgaattc cccggtgcgt gaatccatgg ccggtgcagt tgaggtgttg 1440 gtatatggtg cagccgcact ctaggtccac tcgtctacgc ctgattgctc tcttcttggc 1500 aatcctgtgt ctcggtttga tagagggggg cgtcgaggaa gatgaattta gcattgtgta 1560 gtgtccagcc tctcaatgct gcattttcct ctttgtctag gaagtcttta tagctggccc 1620 cctctccagg attgcacagc acgattgaag ggaccccacc ttcaatcaaa cgaggctttc 1680 cgtatttgca gtttgtctgc catttctgtt gggcccctat tagctctttc cagtgtttca 1740 actttaggta atgcggagcg acgtcatcaa tgacgttata ctccacttga tcagaatata 1800 cctttgagtt gaaatctaga tggccactga agtaattatg tgggcctaat gctctagccc 1860 acatcgtctt gccagttcga gaaccacctt caacaattaa acttatgggc ctcaatggcc 1920 gcgcagcgga acccctccca aaataatcat cggcccactc ttgcatctcg tctggcacgt 1980 tagtgaatga ggagagtcga aacggagggg cccatggctc cggagccttt gcaaatatcc 2040 tatctaaatt actatttaga ttgtgaaact ggaataggaa cttttccggc aacttctccc 2100 ggattatctg caaggcgact tctttggaag gggcgttcaa ggcttctgcg gcagcgtcgt 2160 tagctgtctg gcaaccgcct ctagcacttc tgccgtcgat ctggaattcc ccccacgcga 2220 gagtatctcc gtccttgtcg atgtaggact tgacgtcgga tgatgattta gctccctgta 2280 tgttaggatg gaaatgtgct gacctggttg gggataccag gtcgaagagt ctgttattcg 2340 tgcattggaa tttcccttgg aactgtataa ggacgtggag atgaggctcc ccattttcgt 2400 ggagctctct gcagattttg atgaacttct tgttaactgg tatcgataag ctctgtaatt 2460 gggaaagtgt ctcctctttg gttaaggagc actggggata agtcaagaaa taattcttgg 2520 cacttatttt aaaacgcttt ggcggtggca tttttgtaaa taaggggtgt accccaattg 2580 agagctcgct ctataagtca tatgaattgg ggtaatgggg acaatatata gtagaagatc 2640 ctaaggggct ttaagcggcc atccgcacta atatt 2675 //