ID KC706535; SV 1; circular; genomic DNA; STD; VRL; 2676 BP. XX AC KC706535; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Sida micrantha mosaic virus isolate BR:Pda37:05 segment DNA-A, complete DE sequence. XX KW . XX OS Sida micrantha mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2676 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2676 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (01-MAR-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; ebfb07c074c525cfad95ddf5e2dc0109. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2676 FT /organism="Sida micrantha mosaic virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Pda37:05" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2005" FT /db_xref="taxon:228897" FT CDS 242..1024 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QMX4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QMX4" FT /protein_id="AGH29603.1" FT /translation="MYDVRNYFEMPKRDPSWRQMAGTSKVSRSTNFSPRGGGGPKYNKA FT SEWVHRPMYRKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNG FT ITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMF FT DNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGK FT YENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1021..1419) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJ83" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJ83" FT /protein_id="AGH29604.1" FT /translation="MDSRTGEFITVPQAENGVYIWEITNPLYFKMYNVEDPLYTRTRVY FT HIQIRFNHNLRKALGLHKAYLNFQVWTTSLTASGTTYLIRLRRLVMMYLDQLGVISLNN FT VIRAVRFATDTAYVNYVLEDHDIKFKFY" FT CDS complement(1166..1555) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:C1JL51" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C1JL51" FT /protein_id="AGH29606.1" FT /translation="MLNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGCTIYQHLNCTG FT HGFTHRGIHNCTSGREWRLYLGDNKSPVFQDVQRRGSAVHEDQSVPHTDKVQPQPQESI FT GSPQGLPELPSLDDFSDSFWNDLFD" FT CDS complement(1476..2552) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ12" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ12" FT /protein_id="AGH29605.1" FT /translation="MPPPKRFKISARNYFLTYPQCSLTKEETLSQLQSLPTPVNKKFIK FT ICRELHENGEPHLHVLIQFQGKFQCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEIALQIIREKLPEKFLFQFH FT NLNSNLDRIFAKAPEPWAPPFRLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVEG FT GSRTGKTMWARALGPHNYFSGHLDFNSKVYSDQVEYNVIDDVAPHYLKLKHWKELIGAQ FT QKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENAALRGWTLHNAKFIFLD FT APLYQTETQDCQEESDQA" FT CDS complement(2138..2401) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QLF2" FT /protein_id="AGH29602.1" FT /translation="MKMGSLISTSLSSSRGNSNARITDSSTWYPQPGQHISIQTYRELN FT HRLTSSPTSTRTEILSSGENSKSTEEVLEAVARQLTTLPQKP" XX SQ Sequence 2676 BP; 654 A; 620 C; 651 G; 751 T; 0 other; accggatggc cgcgcgattt tccccccccc cacgtggcgc gctggtggtc gtgcgatctc 60 tctccccctc tctcgcgcga cgtggagctc tggtgtccgc gcgttccccc ccgcgcgctc 120 tgcctttaat tgaaattaaa ggaaataact ttcatcagga ccaatgaaat tgcgtctttt 180 aagcctagat atttgcgaaa gacttgggcc ctaagttgtt tgacagctat ataattaagt 240 catgtatgac gtcaggaatt atttcgaaat gcccaagcgg gatccctcat ggcgccagat 300 ggcgggaacc tcaaaggtta gccgctctac caacttttcc cctcgtggag gtggaggccc 360 aaagtacaac aaggcctcgg aatgggttca caggcccatg tataggaagc ccaggatata 420 caggatgata aggactcctg atgttccaag aggctgtgaa gggccttgta aggtccagtc 480 ctacgagcag cgtcacgaca tctcacatgt cgggaaggtc atgtgcatat ctgatgtcac 540 acgtggcaac ggcataaccc accgtgtcgg taagcggttc tgcgttaagt ctgtctacat 600 tttagggaag atatggatgg acgagaacat caagctcaag aaccacacga acagtgtcat 660 gttctggttg gtcagagacc gtagaccgta tggtactcct atggactttg gccaggtgtt 720 caacatgttt gacaacgagc ccagcactgc tacggtgaag aacgatctcc gtgatcgtta 780 tcaagttatg cacaagttct acgccaaggt cactggtggt caatatgcca gcaacgagca 840 ggctctggtc aagaggttct ggaaggtcaa caatcatgtg gtgtacaacc accaggaagc 900 tggcaagtat gagaatcaca cggagaatgc tttgttactg tatatggcat gtactcatgc 960 ctctaaccct gtgtatgcaa cgcttaagat tcggatctac ttctacgatt cgataaccaa 1020 ttaataaaat ttgaatttta tatcatgatc ttcaagtaca tagtttacat aggctgtgtc 1080 agtggcaaag cgaacagctc taattacatt gttaagggaa attacaccta attgatctaa 1140 gtacatcatt acaaggcgtc taagcctaat caaataagtc gttccagaag ctgtcagaga 1200 agtcgtccag acttggaagt tcaggtaggc cttgtggaga cccaatgctt tcctgaggtt 1260 gtggttgaac cttatctgta tgtggtacac tctggtcctc gtgtacagcg gatcctctac 1320 gttgtacatc ttgaaataca ggggatttgt tatctcccag atatagacgc cattctctgc 1380 ctgaggtaca gttatgaatt ccccggtgcg tgaatccatg gccggtgcag ttgagatgtt 1440 ggtatatggt gcagccgcac tctaggtcca ctcgtctacg cctgatcgct ctcttcttgg 1500 caatcctgtg tctcggtttg atagaggggg gcgtcgagga agatgaattt agcattgtgt 1560 agtgtccagc ctctcaatgc tgcattttcc tctttgtcta ggaagtcttt ataactggcc 1620 ccctctccag gattgcacag cacgattgaa gggaccccac cttcaatcaa acgaggcttt 1680 ccgtatttgc agtttgtctg ccatttttgt tgggccccta ttagctcttt ccagtgtttc 1740 aactttaggt aatgcggagc gacgtcatca atgacgttat actccacttg atcagaatat 1800 acctttgagt tgaaatccag atggccactg aagtaattat gtgggcctaa tgctctagcc 1860 cacatcgttt tacccgttct gctaccgcct tcaacaatta aacttatggg cctcaatggc 1920 cgcgcagcgg aacccctccc aaaataatca tcggcccact cttgcatctc gtctggcacg 1980 ttagtgaatg aggagagtcg aaacggaggg gcccatggct ccggagcctt tgcaaatatc 2040 ctatctaaat tactatttag attgtggaac tggaataaga acttttccgg taacttctcc 2100 cggattatct gcaaagctat ctctttagaa ggggcgttta aggcttctgc ggcagcgtcg 2160 ttagctgtct ggcaaccgcc tctagcactt cttccgtcga tttggaattc tccccactcg 2220 atagtatctc cgtccttgtc gatgtaggac ttgacgtcag acgatgattt agctccctgt 2280 atgtttggat ggaaatgtgt tgacctggtt ggggatacca ggtcgaagag tctgttattc 2340 gtgcattgga atttcccctg gaactggata aggacgtgga gatgaggctc cccattttca 2400 tggagctctc tgcatatttt gatgaacttc ttgttaactg gtgttggtaa gctctgtaat 2460 tgggaaagtg tctcctcttt ggttaaggag cactggggat atgtcaagaa ataattccta 2520 gcacttattt taaaacgctt tggcggtggc atttttgtaa ataaggggtg taccccaatt 2580 gagagctcgc cctataagtc atatgaattg gggtaatggg gacaatatat agtagaagat 2640 cctaaggggc tttaagcggc catccgcact aatatt 2676 //