Dbfetch
ID KC706532; SV 1; circular; genomic DNA; STD; VRL; 2657 BP. XX AC KC706532; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Sida micrantha mosaic virus isolate BR:Jai43:08 segment DNA-B, complete DE sequence. XX KW . XX OS Sida micrantha mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2657 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2657 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (01-MAR-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; d3d8748cf4da46af34a91684f178244c. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2657 FT /organism="Sida micrantha mosaic virus" FT /segment="DNA-B" FT /host="Solanum lycopersicum" FT /isolate="BR:Jai43:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:228897" FT CDS 549..1319 FT /codon_start=1 FT /product="nuclear shuttle protein" FT /note="NSP" FT /db_xref="GOA:M4QLE8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:M4QLE8" FT /protein_id="AGH29597.1" FT /translation="MIASRYRRGWSSIQRRGYTRNSVFKRSYGPKRSDVRRRPSNPNKA FT QEDGKMSTQRIHENQFGPEFVMGHNSAISTFITYPTLGKALPNRSRSYIKLRRLRFKGT FT VKIERVHADVNMDGSNPKVEGVFSLVVVVDRKPHLGSSGALLTFDELFGARIHSHGNLA FT ISPSLKDRFYIRHVLKRVLSVEKDTMMVDLEGTTTLSNRRFSCWSSFKDVDRESCNGVY FT ANISKNALLVYYCWMSDNMSKASTFVSFDLDYVG" FT CDS complement(1400..2281) FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:M4QW52" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:M4QW52" FT /protein_id="AGH29596.1" FT /translation="MESQLVNPPNAFNYIESQRDEYQLSHDLTEILLQFPSTASQLSAR FT LSRSCMKIDHCVIEYRQQVPINAVGSVVVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTEKDIDFSHVGYGKWERKMIRSASISGVGLHSPIEIRPGESWAVRSTVGISHSDAD FT SDAENAMHPYRQLHRLGTSSLDPGDSASIVGAQRAQSNITMSMAQLNELVRATAQECIN FT SNCTPSQPKSLH" XX SQ Sequence 2657 BP; 653 A; 563 C; 668 G; 773 T; 0 other; accggatggc cgcgcgattt ttcccccccc cctacgtggc gcgctggtgc ccgtcggata 60 cccctctccc tggtggtccc cctctcctgg tgcgtttccc ccctccccgg ctcaattcaa 120 ttgagcgctt ttttggagtc cgcgaaatgg gttaaccgca ttttttgacg tccgcctacg 180 tttggtccct ttaattttga attaaagggt gtataaatac tattgtccaa tcatttcgct 240 cgggttgtct cctcgcgcga cgctcgcctt tgcccaacgg gatgagatgt gatcttggcc 300 gttggataat aatataattt attcagcctc tttaatttga aatttgaatt atttgcgagc 360 gtcgtgctat catgtcccat cgtacgaact tgatgagatg gaccagttaa gttgcaccta 420 cagagttaaa ttgatcaagg aatttatgtt taaattccct ggtgacagat ggtgatatca 480 ggtttattga ccacgtctat tttttgagta gatacagtta acgtttgtgt gctagtcaat 540 tttaaaacat gatcgccagt aggtatagac gtggttggtc gtctattcag cgacgaggtt 600 acacacgtaa ttccgtattt aagcgttcat acggacccaa acgaagtgat gtcaggcgac 660 gacccagtaa tcccaacaag gcccaagaag atggcaagat gtctactcaa cgtatacacg 720 agaaccagtt tgggcctgaa tttgtgatgg gtcacaattc agccatttcg accttcataa 780 cataccccac tcttgggaag gctctcccta accggtccag gtcatatatc aagttaagac 840 gactgcgttt taagggtact gtcaagattg agcgtgtgca tgctgacgtc aacatggatg 900 ggtccaaccc aaaggtggaa ggagtcttct ctcttgttgt tgttgtggat cgtaaacccc 960 atttgggctc atctggagcc cttcttacat ttgatgagct atttggtgct aggatccaca 1020 gccatggtaa tctggctata tcaccatcgc tcaaggatcg attctacata cgtcatgtgc 1080 tcaaacgtgt gctgtccgta gagaaggata cgatgatggt ggacctggaa gggactacga 1140 ctttgtctaa cagacggttt agttgttggt catcgtttaa ggacgttgac cgtgagtcgt 1200 gtaatggcgt ctatgctaac ataagcaaga acgccctctt agtgtattac tgttggatgt 1260 cggataatat gtctaaggca tcgacatttg tatcgtttga cctcgattat gtcgggtaat 1320 taatataatt acaacaagct taatgcaaat gaccagttta attttaatta gtaagtagac 1380 atgttcctct acaataatct cagtgcaatg atttgggctg agaaggggta cagttgctgt 1440 tgatacattc ctgggccgta gccctaacta gctcgtttag ttgggccatt gacatagtta 1500 tgttggattg ggccctctga gcacccacga ttgaggccga gtcacctggg tccagactac 1560 tggttcctag tctgtgcagc tgcctatatg ggtgcatagc gttctctgca tcggagtctg 1620 cgtctgagtg actgatccct acagtgctcc tgacagccca ggactctcca ggccttattt 1680 caattgggct atgcagccca acacccgata tggacgcaga tctgatcatc ttcctctccc 1740 actttccgta gcccacgtgg ctgaagtcga tgtccttctc tgtaaactgc ttggagagga 1800 tcttcactgt tggggcacgg aaaggtatgt ctacagagtg tttcgccgtc gatagcttca 1860 gctttccctt gaatttcgcg aagtgggtcc tttgatggac gttagtgtcg cacactctgt 1920 agtacaattt ccatggaatt gggtccttga gggagaagaa ggacgaggaa aagtaatgga 1980 gatcgatgtt gcatcgtatc ggaaacgtcc aggacgcttg cagcgactcg ttgtcagtca 2040 tcctcttgtc atggatctct acgacgacgg aacccacggc gttaataggt acttgttgtc 2100 tgtattctat gacgcaatgg tctattttca tacagctgcg acttagccgg gcgcttaatt 2160 gggacgccgt ggagggaaat tgaagaagaa tctctgtcag gtcatgagaa agctgatatt 2220 catcacgctg agactcaatg taattgaatg cgtttggagg attcactagc tgagattcca 2280 ttgattttta ttatcggaaa taggccgcgc agcgggaacg acagcgagat ttgaacaggt 2340 gaaacaaata ggtctgaaag actttagggt ttatgttgat ggtgaaagag taaagtggga 2400 gaagatgata atgaagacga gttgggttgg gctgttaatg gacggattga gaggagatat 2460 tgtccaattg aggtgtttca tttagcaact cgtctgatgc ctctttaaat agatgagtag 2520 tacggagtgg catatttgta aataaggggt gtaccccgat tgagagctcg ctctataagt 2580 catatgaatt ggggtaaagg ggacaatata tagtagaaga tcctaagggg ctttaagcgg 2640 ccatccgcac taatatt 2657 //