ID KC706531; SV 1; circular; genomic DNA; STD; VRL; 2643 BP. XX AC KC706531; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Sida common mosaic virus isolate BR:Coi5:07 segment DNA-A, complete DE sequence. XX KW . XX OS Sida common mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2643 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2643 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (15-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; d291128766b1531fd24ef684f8175fa0. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2643 FT /organism="Sida common mosaic virus" FT /segment="DNA-A" FT /host="Sida micrantha" FT /isolate="BR:Coi5:07" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2007" FT /db_xref="taxon:536082" FT CDS 228..977 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:B3GNA6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B3GNA6" FT /protein_id="AGH29592.1" FT /translation="MPKRDPSWRSMAGTSKVSRSSNFSPRGGPKINKASEWVNRPMYRK FT PRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCV FT KSVYIIGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKN FT DLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLL FT YMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(974..1372) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QMW5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QMW5" FT /protein_id="AGH29593.1" FT /translation="MDSRTGEFITAPQAENGVYIWEITNPLYFKINHVEDILFTGTRVY FT HIQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVMLYLDQIGVISINN FT VIRAVRFATNRPYVNHVLEKHSIKFKIY" FT CDS complement(1119..1508) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QJ04" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QJ04" FT /protein_id="AGH29595.1" FT /translation="MLSSSPSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHS FT HGFTHRGVHHCSSSREWRVYLGDNKSPIFQDQPCRRHPVHRDQSVSHPDTVQPQPQESV FT GSPQGIPELPSLDDISEGFWDDIFT" FT CDS complement(1429..2508) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QJ75" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QJ75" FT /protein_id="AGH29594.1" FT /translation="MPRKGSFSIKAKNYFLTYPQCSLPKEEALEQIRVIQTPVNKKFIK FT VARELHEDGQPHLHVLVQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYV FT EKDGDTVEWGTFQIDGRSARGGQQTANDVAAEALNAGTKEEAMMIIKEKMPEKFLFQYH FT NLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPVSIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEVDYNVIDDVPPHYLKLKHWKELIGA FT QKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKMFLDKEENSGLKNWTIHNAIFVTL FT TTPLYQGSTQSGEEEGNSP" FT CDS complement(2109..2351) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B3GNB0" FT /protein_id="AGH29591.1" FT /translation="MGSHISTFSFSSKGSSTAQIADCSTWYPHPGQHISIRTYRVLNPA FT PTSSPTSRKMVIQSNGGRSRSTEEVLEEVSRRLTT" XX SQ Sequence 2643 BP; 667 A; 604 C; 624 G; 748 T; 0 other; accggatggc cgcgcgattt tttgcccccc gacgtggcgc tatggtggcc gctcgatctc 60 tctctcccgc gcgctgtact cctttaattc taattaaagg gctaacttta gtttggacca 120 atgatagtgc gcctgggaag cctagatatc tgcgcgagac ttggggccga agttgttgat 180 caacggctat aaattaaagg aagactgatc acagtctttt attcaaaatg cctaagcggg 240 atccctcatg gcgttcgatg gcgggaacct caaaggtaag ccgctcctcc aatttctctc 300 ctcgtggagg cccaaagatc aacaaggcct ccgaatgggt aaacaggccc atgtacagga 360 agcccaggat atacaggacg ctgagaactc ctgatgttcc tagaggctgt gaagggccct 420 gtaaggtcca gtcttacgag caacgtcacg atatttccca tgtggggaaa gtgatgtgta 480 tatctgatgt gacacgaggt aacggtatca ctcaccgtgt cggtaagcgt ttttgtgtta 540 agtctgtgta tattataggt aaggtatgga tggacgagaa catcaagctc aaaaaccaca 600 cgaacagttg tatgttctgg ttggtcaggg accgtagacc gtatggtaca ccgatggact 660 ttggccaagt tttcaacatg ttcgacaacg agcccagtac tgcaacagta aagaacgatc 720 tccgtgatcg ttatcaagtc atgcacaagt tctacgccaa ggtcactggt ggtcaatatg 780 ccagcaatga acaggctctg gtcaagaggt tctggaaggt caacaatcat gtggtgtaca 840 atcaccagga ggcagggaaa tacgagaacc acactgaaaa cgctctgtta ctgtatatgg 900 catgtacaca tgcctctaat cctgtgtatg cgacccttaa aatccggatc tatttttatg 960 attcggtttc aaattaataa attttgaatt ttattgaatg cttctccagt acatgattta 1020 cataaggcct gttcgtcgcg aaacgaacag ctctaataac attatttatt gagattacac 1080 ctatttgatc taaatacaac atgactaaat gcctaaatct atgtaaatat gtcatcccag 1140 aagccttcac tgatgtcgtc cagacttgga agttcaggaa tgccttgtgg agacccaacg 1200 ctctcctgag gttgtggttg aaccgtatct ggatgtgata cactctggtc cctgtgaaca 1260 ggatgtcttc tacatggttg atcttgaaat ataggggatt tgttatctcc cagatataca 1320 cgccattctc tgcttgagga gcagtgatga actcccctgt gcgtgaatcc atggctgtgg 1380 cagttgatgt ggacgtatat ggagcacccg caatttaggt cgatccttct acggcgagtt 1440 gccctcttct tcgccgctct gtgttgaacc ttgatagaga ggggttgtga gggtgacgaa 1500 gatagcatta tggatggtcc agttctttaa acctgagttt tcctctttgt cgaggaacat 1560 tttatagctg gaaccctcac ctggattgca gagcacgatt gatgggatac cacctttaat 1620 ttgaactggc tttccgtatt tacaatttga ttgccagtct ttttgggccc caatcaactc 1680 tttccagtgc tttagcttta ggtaatgcgg agggacgtca tcaatgacgt tataatccac 1740 ttcgttcgag taaaccctgg aattgaaatc caggtgtcca ctaagataat tatgggcccc 1800 taaagctcta gcccacatcg tcttccccgt ccgactatca ccttcgatta tgatactcac 1860 aggcctctct ggccgcgcag cggaaacgac aagcccaaaa tagtcatcag cccaagactg 1920 catctcgtcc ggaacgttag tgaaagaaga gaggggaaac ggaggagtcc atggctccgg 1980 agcctttttg aaaattctat ccaggttact ggataggtta tggtactgga agaggaactt 2040 ttccggcatc ttttctttga taatcatcat cgcctcctcc tttgttccag cattcaacgc 2100 ttcggcggct acgtcgttag ccgtctgctg acctcctcta gcacttcttc cgtcgatctg 2160 gaacgtcccc cattcgactg tatcaccatc tttctcgacg taggacttga cgtcggagct 2220 ggatttagca ccctgtatgt tcggatggaa atgtgttgac ctggatgggg ataccaagtc 2280 gaacagtctg ctatttgtgc agttgaactt cccttcgaac tgaacgagaa cgtggagatg 2340 tggctgccca tcttcgtgta gctctcttgc aaccttgatg aatttcttgt tgaccggcgt 2400 ttggataacc ctaatttgtt cgagagcttc ttctttagga agagagcact gaggatatgt 2460 aagaaaataa tttttagctt taatagagaa agaccccttt cgtggcattt ttgtaaatat 2520 aggtatgtac ccccaattgc tctcgcctct aaaactctca tgaattgggg gaactggggg 2580 aacttatata tgagaagttc ctaaggttag atctgccacg tggcggccat ccgctataat 2640 att 2643 //