ID KC626784; SV 1; linear; genomic RNA; STD; VRL; 5019 BP. XX AC KC626784; XX DT 26-MAY-2013 (Rel. 116, Created) DT 31-OCT-2013 (Rel. 118, Last updated, Version 3) XX DE Citrus leprosis virus cytoplasmic type 2 isolate hibiscus segment RNA2, DE complete sequence. XX KW . XX OS Citrus leprosis virus cytoplasmic type 2 OC Viruses; Riboviria; Kitaviridae; Cilevirus. XX RN [1] RP 1-5019 RX DOI; 10.1007/s00705-013-1745-0. RX PUBMED; 23732930. RA Melzer M.J., Simbajon N., Carillo J., Borth W.B., Freitas-Astua J., RA Kitajima E.W., Neupane K.R., Hu J.S.; RT "A cilevirus infects ornamental hibiscus in Hawaii"; RL Arch. Virol. 158(11):2421-2424(2013). XX RN [2] RP 1-5019 RA Melzer M.J., Simbajon N., Carillo J., Borth W.B., Freitas-Astua J., RA Kitajima E.W., Neupane K.R., Hu J.S.; RT ; RL Submitted (18-FEB-2013) to the INSDC. RL Plant and Environmental Protection Sciences, University of Hawaii, 3190 RL Maile Way, St. John 205, Honolulu, HI 96822, USA XX DR MD5; 8aa703d0a0077b2febdd281b1fb9bbd2. DR EuropePMC; PMC3812299; 23732930. DR EuropePMC; PMC4926173; 27275832. DR EuropePMC; PMC5786682; 29371356. XX CC GenBank Accession Numbers KC626783 and KC626784 represent sequences CC from the 2 segments of Citrus leprosis virus cytoplasmic type 2 CC isolate hibiscus. CC ##Assembly-Data-START## CC Assembly Method :: CAP3 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5019 FT /organism="Citrus leprosis virus cytoplasmic type 2" FT /segment="RNA2" FT /host="hibiscus" FT /isolate="hibiscus" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="06-Nov-2011" FT /db_xref="taxon:1288500" FT 5'UTR 1..56 FT CDS 57..449 FT /codon_start=1 FT /product="p15" FT /db_xref="UniProtKB/TrEMBL:R4TK15" FT /protein_id="AGM16553.1" FT /translation="MLEDHSNHWFDRDDLGYPPVVTPRTFTCGCEITSYEADTLSFLVE FT NFCRVFSCDEIDCLNHLRQVCLNVDGDAFFICRLYLCSVLHELSCRCWDCEGECRPLGF FT FHGEFRGRVRRHNLSDPNGSPTSVLD" FT CDS 1528..3162 FT /codon_start=1 FT /product="p62" FT /db_xref="GOA:R4TSI2" FT /db_xref="UniProtKB/TrEMBL:R4TSI2" FT /protein_id="AGM16554.1" FT /translation="MDFYTVYTFLNLTLGLLTYNFDSLGTFWSSPSCTSKHCSSLPAEC FT STEHTLKMVVEPHVFTANDHYCISLGYRKNISFSASTLFIGDYDVYGSFECDRTALSMG FT IVSNRLGLYEDALFDCKNYNLSYGNYRFESCLNSSVHDSMMTDRFYAPQLEAAAPINTR FT GVEVFDDFVGFTYYRTSCDTLCGESRFAPDFDFGNYVFYFPLCGSHIPLCYDGAEDACP FT RGYSLQTIFVPSLVEHETDKLARVICVSDVKPGLTFPAWFKDNPSTYDDLVGNYTINIE FT SKCSVTNAKRMRFSRYGITGTYIDDLIVITVDGVHYLTSKFCRDYILFLGYHDGYDNLL FT SMKTYFQKRLKCDADGCWYSGIDYSRILSHCEFSLVVDKKEALVSTFTLFNGTFGGKLG FT FVPTGFFDSVLFGYNVFLFRGFYSYSPHSVTLKSTKYFLVKAEAEWYMKLMMFFAEDVL FT KVCFETIFSVLFGALSACLSFIFNVGGCCFRLVFMCILDSIIILLCLLPCYCHLGFILC FT TVSNLIIRLFMTNNCCFGISDAIASSF" FT CDS 3193..4071 FT /codon_start=1 FT /product="MP" FT /note="putative movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR026228" FT /db_xref="UniProtKB/TrEMBL:R4TX01" FT /protein_id="AGM16555.1" FT /translation="MVSVGADDFSELESILTADYNEEGVFKSSKSVCLRTSKRVGIGFL FT TPNNFISRLNGFIRRKAEDSGLRDMESFRQMSDIVIIIVPQVAFSATLTLKLVDSCNAL FT EAIYDQTTVLCSTSGPHIAIFNTGYSIPNEDRISIGGNETHRRLGISYESRSSAEFGGG FT HITFFTLTLLWREAFSLRPSFYKVHEPRLVPITVGYKKALMSKSHADLKRSISRGMVTT FT GHSAIPSIRTENAISVIEDKKKTVAERGNSAELRHSSIESKNPSSSQNLKPKKLKFFEV FT ERRDNDGSTLS" FT CDS 4052..4672 FT /codon_start=1 FT /product="p24" FT /db_xref="GOA:R4TYS5" FT /db_xref="InterPro:IPR032441" FT /db_xref="UniProtKB/TrEMBL:R4TYS5" FT /protein_id="AGM16556.1" FT /translation="MDQRFLRGASVLNLSNKRDKLKTNASVSLLSDIQQILLRYIQKPY FT VLLMYACVLVLFAMHIDAGTHDILDDLAQQFPNNPVIEWARSNFFRLCGALVFIPVITD FT ARKEHQLYFGMVIALFLLGFPQRSIFEYFVYSLSLHVYAKSKHPFTRVFILVITVVSCV FT LFGVFTNDQLRKLYQELPKVPTHPVNRVERVVNRVGGQQPYTG" FT 3'UTR 4673..5019 XX SQ Sequence 5019 BP; 1240 A; 948 C; 1043 G; 1788 T; 0 other; catagaatcc aatacttgct atcccttata tattacgaaa gttttatata ttgaatatgc 60 ttgaggatca ttcaaatcat tggtttgacc gtgatgattt gggttatcct cctgttgtta 120 caccacgtac ttttacatgt ggttgtgaga ttacttctta tgaagctgat acactatcat 180 ttttagtgga aaacttctgt agagttttct cgtgtgacga gattgattgt cttaatcatc 240 ttcgtcaagt ttgtttaaat gttgatggag atgcattctt tatttgtaga ttgtatctct 300 gcagcgtttt acatgaattg tcatgcagat gttgggattg cgaaggcgaa tgcagacctt 360 tgggattctt tcatggagaa ttccgaggta gagttcgtcg tcataatctt agtgatccta 420 acggatcacc cacttctgta cttgactagt gaacttacct ggatcccagc gcgagctata 480 caggtgttgc atgatctcct tctggacgta aatgcattta gtggatactg ggatgtacca 540 cgcttgtatt ggttcgtact gtgatttggt atgttcttct ggggatttgt tatttgaatt 600 taccattttg acatagactt aaatggttct taaccttcat cggcagttac agctacgctt 660 cggcctagac tgtatttggt ggaacctgga atgcccacac ctttgaagac agtacctgag 720 agtcatatgt ttcgattgtg tatattcatt ttacaattct ccttacttga actgtgccat 780 attttacgtg tatgagatgg tccttaacct tcatcggcag ttacagctac gcttcggccc 840 agactgtatt tggtggtacc tggaatgccc acacctttga agacagtaca atgattctcg 900 tgttttgttg gcattagttc attttataac attagcactt tgaatttacc atggtttata 960 tagatgagac ggatcttaac cttcatcggc agttacagct acgcttcggc ccggactgta 1020 tttggtggta cctggaatgc ccacaccttt gaagacagtt cctttgagtt catatttttg 1080 tggtattttc atgcagcctt gttgtgtatt tgctcgttaa ttacggtcat ctacacaacg 1140 tttcgacgaa tttcctgaca cgttcattac tttgacgttg tttggattag ttcgttgtta 1200 ctgtgagcag ctaagaccag ttaattcaag ttgtgtcatt ttaaacatat ttgagatgac 1260 ttgaatcacg tccatctcaa tattgttatc ctattgagat gaacctgtat cggtcacatt 1320 tttcagtttt accagcacta ttctggtaat ttgtatatat gtaaataggt aagggttctt 1380 gcgtgccaag agtcttctgt attgatgtag tggactgctg tttcgatgga gttacagcag 1440 tacttgcatt gatatgtaaa tgcacagaga tacgtatcga tgttccacac cttaatacaa 1500 tgacaaatca aggtatgagt tcacacgatg gatttttata ccgtgtatac gtttttgaac 1560 ctaaccttgg gattgctcac atacaacttt gatagtttag gtactttttg gtcttctcca 1620 tcatgtacct caaagcattg ttcttcacta ccagctgagt gcagtactga acatactttg 1680 aaaatggtcg tcgaacctca tgttttcaca gctaatgacc actactgtat aagtctggga 1740 tatcggaaga acatttcttt tagcgcctct accttgttta ttggggacta tgatgtttat 1800 ggcagtttcg agtgcgatcg tactgcctta tccatgggca tagtttccaa cagacttggt 1860 ctttatgaag acgcactttt tgactgtaag aattacaatc tttcatacgg taattaccgt 1920 tttgaatctt gtcttaattc atcagttcat gacagcatga tgaccgatag gttttacgct 1980 ccacaattag aagctgctgc acccataaat accagaggtg ttgaagtgtt cgacgatttt 2040 gtggggttta catactatcg gacttcttgc gacactttgt gcggcgagtc aagatttgca 2100 ccagattttg acttcggcaa ttatgttttc tacttcccgc tttgtggtag tcatattcct 2160 ctgtgttatg acggcgcgga agatgcatgt ccacgtgggt actccttgca gacgatattt 2220 gttccgtctc ttgttgagca tgagacggat aaactcgctc gcgtcatatg tgtttcagat 2280 gttaaacccg gcttaacttt tccagcttgg ttcaaagata acccctccac atatgatgat 2340 ttagttggta actatactat aaatatcgag tctaagtgca gtgtgaccaa tgctaagaga 2400 atgcgatttt ctcgttatgg catcactgga acttatatcg atgatttaat agttatcact 2460 gtcgatggag tgcattatct cactagtaaa ttttgtagag attacatttt attcttggga 2520 taccacgatg gttatgataa cctcctcagt atgaagactt attttcaaaa acgactgaag 2580 tgtgatgctg atgggtgttg gtacagtgga attgattatt cgcgtatctt atcccattgt 2640 gaattctctt tagtcgttga taagaaggaa gctcttgttt cgacgttcac attattcaat 2700 ggaacatttg gagggaaact tgggtttgta cccactggtt ttttcgattc tgttttattt 2760 ggttataatg tgtttttatt tcgtggattt tactcgtatt cacctcatag tgttacgtta 2820 aaatcgacga aatattttct ggttaaggct gaagctgagt ggtacatgaa gcttatgatg 2880 ttcttcgccg aagatgtgct gaaggtgtgc tttgaaacaa tcttcagtgt actgttcggt 2940 gcattatccg cttgtttgtc attcattttc aatgttggtg gttgttgctt ccgtttagtt 3000 ttcatgtgca ttttggattc aattataatc ttattatgct tattgccttg ttactgtcat 3060 ttgggtttta tcctttgtac agtttcaaat ctcataataa gattatttat gacgaacaat 3120 tgttgcttcg gtatttccga tgctattgca tcctcttttt aaatcaagac gacttgtcgt 3180 gatttattga gcatggtttc tgttggtgcc gacgactttt ctgaacttga atccattttg 3240 acagctgatt acaatgagga gggggtgttt aaatcatcta agtcagtgtg tctgagaact 3300 tctaaaagag ttggtatcgg gttcctgact ccaaacaact ttatatcacg tcttaacgga 3360 ttcatcaggc gtaaagccga agattccggt ttacgagata tggaatcttt tagacagatg 3420 tccgacatag ttattataat cgtcccacaa gttgcatttt cggctactct tacacttaag 3480 ttagttgatt cgtgcaacgc tttggaagct atttatgatc agaccactgt attatgttct 3540 acatcgggtc ctcatattgc tatctttaat acgggatatt ctattccgaa tgaagatcgt 3600 atctctattg gtgggaacga gacgcataga agattaggta tatcttacga gagccggagc 3660 tctgcagaat tcggtggtgg acatatcaca tttttcacgc ttactctttt gtggcgtgaa 3720 gcattttctt tgcgaccatc cttttacaag gtacacgagc ctcgacttgt gcctataact 3780 gtgggttaca agaaggccct aatgtccaag tctcatgcag acttgaagag atctatctca 3840 cgtggtatgg ttaccactgg acattctgct attcctagca ttaggacgga gaatgccatt 3900 agtgtgatag aggataagaa aaagacggtc gctgagcgtg ggaattctgc agagctccgg 3960 cactcttcta ttgaaagcaa gaatcctagt tcatcgcaaa atttgaaacc gaagaagttg 4020 aaattctttg aagtcgaaag acgcgataac gatggatcaa cgctttctta gaggagcatc 4080 agtgctgaat ttgtcgaaca agcgagacaa gctgaagact aatgcttcag tgtctctttt 4140 gtccgacata caacaaattt tgttaaggta cattcagaag ccttatgtac ttctcatgta 4200 tgcctgtgta ctggtcctat ttgctatgca catagatgct ggtacccatg acatacttga 4260 tgatttggcc caacaatttc cgaacaaccc agtcattgag tgggcgagga gtaacttctt 4320 taggctgtgc ggtgcgctgg ttttcatacc tgttataact gatgctcgta aagagcacca 4380 gttatatttt ggtatggtca tcgcactctt cttgttagga tttccgcaac gttcaatatt 4440 tgaatacttt gtgtattcat tatctttgca cgtttacgct aaatccaaac atcctttcac 4500 ccgagtattt atcctggtga tcaccgtagt ttcatgcgtc ttatttggcg tgtttacgaa 4560 tgaccagctc aggaagttat accaagagtt accgaaagtt cccactcatc ctgtcaacag 4620 agttgaaaga gttgttaacc gcgttggtgg tcaacaacct tatacaggat gactattttt 4680 gattgttccg gggtttttgt tacggcttct tttccccgta agtttagaaa ccgttttgag 4740 cacttatata agtgtctgct tatatactcg ttcattatta tttcctgaag acacttcgtg 4800 ttttcttcaa ttctctgagg ttttctatgg attctttcct cagattttta attgaatcca 4860 tcaaaattct atagtgacca atcacaacag aattttgtat tccggtcgtt gtcagctggg 4920 aggggtttaa attccctaac gattagttaa tttatgtctc ttctggctgg gattagattc 4980 ccttttcttt tctttctttt ctttttttgt cattttgac 5019 //