ID KC614703; SV 1; linear; genomic RNA; STD; VRL; 7373 BP. XX AC KC614703; XX DT 17-MAR-2013 (Rel. 116, Created) DT 03-OCT-2021 (Rel. 144, Last updated, Version 3) XX DE Avisivirus A1 isolate USA-IN1, complete genome. XX KW . XX OS avisivirus A1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Avisivirus. XX RN [1] RC Publication Status: Online-Only RP 1-7373 RX PUBMED; 23640375. RA Ng T.F., Cheung A.K., Wong W., Lager K.M., Kondov N.O., Cha Y., RA Murphy D.A., Pogranichniy R.M., Delwart E.; RT "Divergent picornavirus from a Turkey with gastrointestinal disease"; RL Genome Announc 1(3):E00134-13(2013). XX RN [2] RP 1-7373 RA Ng T.F.F., Cheung A.K., Wong W., Lager K., Kondov N.O., Cha Y., RA Pogranichniy R., Delwart E.; RT ; RL Submitted (13-FEB-2013) to the INSDC. RL Molecular Virology, Blood Systems Research Institute, 270 Masonic Ave, San RL Francisco, CA 94118, USA XX DR MD5; d03385ac01f16e0939608ead1527e8e4. DR EuropePMC; PMC3642282; 23640375. XX CC ##Assembly-Data-START## CC Assembly Method :: Geneious v. R6 CC Sequencing Technology :: Sanger dideoxy sequencing; 454; Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7373 FT /organism="avisivirus A1" FT /host="Meleagris gallopavo" FT /isolate="USA-IN1" FT /mol_type="genomic RNA" FT /country="USA: Indiana" FT /collection_date="01-Oct-2010" FT /PCR_primers="fwd_name: TAviVRdrpF, FT fwd_seq:ggaatcgtaacccagcgtat, rev_name: TAviVRdrpR, FT rev_seq:catgagactgaccattggttt" FT /db_xref="taxon:2849512" FT 5'UTR 1..609 FT CDS 610..7107 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:M4PJD6" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:M4PJD6" FT /protein_id="AGH06056.1" FT /translation="MDPISEIAGAVTEVAKDLAPAPINQIIEGVSNLTTTPSANSTIQT FT SAPTVDTSIPHGTSQILDSFFSCGTVQETSVLNYEKMILLDQAEWGTNPDVTHCLLKTS FT VPGAFFSDASRPAHGISKYFRLLRCGYRFTVVLSVPPGACGAVAMVFVPPGFNNKMTVG FT QTVTKWDPEAVLTLPHVVVDSRTSNAGTLTVPYVNYQSYCNLEQNGNQAFVAVLVLGKY FT NSGTGTSSTCDIALYGELLDTDFQCPRPVSQGRRRKASRPEQNPTTAMVSIASGPGSAN FT LANSTIAPRLADSLAIANEGTAVDYSTAGCDQSVNDIIELARSWQLAAYGKLNSADKDT FT VILNMNFVPYSYGNLGLLFDKFQYWRGSLEVQFVMYSNSLASGRYQLCWFPADWSDSSR FT AYTLAQLRNSIYATGDVSSAPCTLVLPFTNQNWRRRCDSNYGSITVRMVNRLAVNGSST FT THFSYALFVRAGQDLQFFAPRYGDYSIQQGPIEGETYNQASTLSTNFEISDVVIHGSKH FT TQIDNYFGRAWVEGFHTSTAASTAMKLPLQTPRHSHGSAMLGFAYWCGEVVITVHNRSQ FT NMLICAHSYDLEEQHSQVNEQSIFSLGAILVPPREVKTFRAPWYSQTPLRRPLDDPNEP FT SMGFLYVSSEGTSDFTVYLALHKPKFFFPLPCPMFTSNQSREAPRQPKSIAERKIELSS FT VARRTLEWARREVGAIDETDHKDILLGGDIEENPGPQSVYLLGLSGCGKSRLINAIAGH FT PLCDSRLSPNPIHTETHSHQLMGYEIFEQVGMPPAGGKYVYLQEATRFDKEHVDYIREM FT DKLHPGWRRHAVLYVNRLGDTKLSQYLRGVPELAGFKEATDNPLNVIPLLVSIDTYVGT FT GVQLVCKNRGVYKHFGVREGDKVYHINTENLVKTALDGEVAVMVEDYSDGWIPCSPEEK FT IGAVSFVQTGTLDGVTFSCDFNCETWAKIFVPSEGETQGQRLKKVMAIAAGAAFVYGLP FT RGEGFDFMQCVTKVMMTLFSKQVKTIVVKMVIKFFCRLCCYLVLYCHSPNLVNTAMLTI FT LLTLDVFDTEIDEISGKVAKALVSGDFKAAGRAMMEAADRKCEDFKCEGKRTLQSEGPD FT ATGKSFNTWTLVAKNLEWWVDKLKQFINWIRTKLFPSDARDKIEAMESVRDRMVLSLAA FT ADKHLVTLKADKAYATSKAARDYHLKITNEIIDLNAMDLGPDFRDLGTKIGQILNRLQS FT VTFDSVDAGSMRQEPLGIWISGEPGCGKSFLSHLIIKHLKEKKGFSVFCNPSGSDHMDG FT YNGQEIHYFDDLGQIREEADIKLMCQLISSQQFIVPKADLTSKGTLYNAKVVIATTNKN FT EFDSTVLNDSGALRRRFPIRLHVRPHSFYSTQDGRLDLNRAMKDGDIDPGCWEINVGTG FT RSCWQTLNWDILIHEVEDELINRENINKFFSQGAIFESDEVEVIPEQGPGSVNKSTVTK FT LKNWINSLIDRAKSFFERNKCWFYLGSALATLATLVTTALPAARNYLSNLYSGEPTRAK FT VTRVTREFQSEGPSYYSLKDRLVEVGETGSTGLALGGKVVLSFGHNDDSKFITYKDQEH FT PVVKEENISVNNSPQDLALLTVQTPYQFKEIRRKIYADVYSGDGFLLFLKKGTLIAHQV FT KRITPCDNIMTQQGHQTQFAYRYQVNSASGWCGGVLVGIVGGNPMILGMHVAGNGSHGI FT AARIFPNFSQGIVTQRMPNTELYFQPRRSEIYPSPANDGTSSVEPPVLSNRDKRLEEPI FT DDITKHNADRHKMNRFNPPMDAFQVAKANVISELASIVAPCYHMTYDQVVDSSLLPIDW FT TTSPGLEFKGKTKKQLIDDPAFKERVMKLYKSFAGGNSAPPQVKYTTYLKDEVRSKEKV FT KKGATRTITASSFDYTIACRMIFGNIFRQLFGNGLPAGFAPGMNPYTQFDELYDSCRLN FT VICLDYSKFDASLSKELMEHAIEVVACFSEDPMSVIRAFQPTLISQERVSDELWEVRGS FT MPSGSPWTTMINTICNLLMCKTYLLDMGHDITKTYVVCYGDDCVISVDQCHRLEGIEQW FT FMDKFGATVTPEDKSGKIKWRFKNKLKFLKRTPMQLDWLPKIVGALDIDSMMDRIQWTK FT GHFQEQLNCFYYELALHGEDTYNEARRSIAFRCPELVHPTYHCALETIKPMVSLM" FT misc_feature 610..2754 FT /note="Region: P1" FT mat_peptide 610..1368 FT /product="VP0" FT mat_peptide 1369..2070 FT /product="VP3" FT mat_peptide 2071..2745 FT /product="VP1" FT misc_feature 2746..4911 FT /note="Region: P2" FT mat_peptide 2746..3603 FT /product="2A" FT mat_peptide 3604..3921 FT /product="2B" FT mat_peptide 3922..4911 FT /product="2C" FT misc_feature 4912..7104 FT /note="Region: P3" FT mat_peptide 4912..5136 FT /product="3A" FT mat_peptide 5137..5196 FT /product="3B" FT mat_peptide 5197..5730 FT /product="3C" FT mat_peptide 5731..7104 FT /product="3D" FT 3'UTR 7108..7373 XX SQ Sequence 7373 BP; 2115 A; 1601 C; 1731 G; 1925 T; 1 other; ttgaaagcga atgtatggcc gcatttccac actagtaact agtagtggta tgcggctgtg 60 cattcgcttt ccccccctct ttataggggc ggtctttgta tctttactaa tttcctactt 120 ttctatcatc tctttttaag gtagggacta aggtctccta gcccttcccc ccctgggctt 180 tccaggatca agggggttct aaagctaggc catgtttcct gagcctcatt tagtacggag 240 agttagtagt cataaaacat gccagtaacc ttctagtgcc caagggtgac agagtggtaa 300 cactctcctt ggggcccgaa aggctagtgg gcatagttgt taccaaggaa ggggtcccca 360 ccccaacctg aactaacagc tagaagctca ccttagaaga agtgctggat cccaacatgt 420 cttataatga aagctcaatg gaaaggtgag gagatggaag catgggggtt cactgagtag 480 atgccctgaa ggagaaatct gatcaggggc ccgtgactat acattaggta aaccgggtat 540 aaaaaccatg aaaggtgacc cacaaatttt cctttatttt tatgttttgt tggtgtgaat 600 tcaggcaaga tggatcccat tagcgaaatt gcaggcgctg taaccgaagt ggccaaagat 660 ctggctcctg ctcccataaa tcaaattatt gaaggagtta gtaatcttac tacaaccccc 720 tctgccaatt ctaccatcca aacatcggct ccaacggttg acacatctat tccgcatggg 780 acgtcacaaa tcttggactc attcttttca tgtggaacgg tacaagaaac atcagttctc 840 aattatgaga aaatgatact tctggaccaa gcagaatggg gaacgaatcc agatgttaca 900 cattgtctgc tcaaaacgtc agtgccagga gcgtttttct cagatgcatc aagaccggct 960 catggaattt ctaagtattt cagactattg cgttgtgggt ataggttcac agttgtcttg 1020 tctgttcctc caggagcatg tggagctgta gcaatggtgt ttgttcctcc gggtttcaac 1080 aacaaaatga cggtgggcca gacagtaaca aaatgggacc ctgaagctgt cctgacactt 1140 ccacatgtgg tggttgattc ccgaactagc aacgcaggca ccctaaccgt cccatatgtc 1200 aactatcagt cctattgcaa tttggaacaa aatgggaatc aagcctttgt ggcagtgctg 1260 gtgcttggga aatataacag tggtactggg acatcctcta cctgtgacat agccctttac 1320 ggggagctgt tggatactga tttccagtgt cctaggcctg tgagccaggg gagaagacgc 1380 aaagcatcaa gacctgagca aaacccaact accgcaatgg tatccattgc aagcggccca 1440 ggaagtgcta atttggccaa ctccactatt gccccgaggt tggcagactc tttggccatt 1500 gctaatgaag gaaccgcagt agattactca actgctggat gcgaccaatc agtgaatgac 1560 atcattgagc tggcccggtc ttggcaattg gctgcatatg gcaaattgaa cagtgctgac 1620 aaggacacag tgatattgaa tatgaatttt gttccataca gttatgggaa tttgggattg 1680 ttgtttgaca agttccaata ttggaggggt agtttggaag tgcaatttgt catgtattca 1740 aacagtcttg ccagtggtcg gtatcagctc tgttggttcc ccgcagattg gtctgactca 1800 tctcgtgctt acactctggc acaactgcgg aattccatct atgctactgg agatgtatca 1860 tcagcccctt gtactctagt cttgcccttc accaatcaaa actggaggcg gagatgcgat 1920 tcaaactatg gctccatcac agtgcgaatg gttaatagat tggcagtcaa tgggtcatcc 1980 acaacacatt ttagctatgc actgtttgtc agagctgggc aagatctgca gttctttgct 2040 cctcgctatg gtgattactc aatccagcaa ggaccaatag aaggtgagac atataatcaa 2100 gcctcaacac tgtcaacaaa ttttgaaatt agtgatgtgg tcattcatgg ctctaaacac 2160 actcagattg acaattattt tgggagagcg tgggtagaag gttttcacac ctcgaccgca 2220 gcttcaactg caatgaaact ccctttgcaa accccacgac attcacatgg ttccgccatg 2280 ttagggtttg cctattggtg tggagaggtt gtcatcactg ttcacaacag atcacaaaat 2340 atgcttatct gtgcccacag ttatgacctt gaggagcaac attctcaggt gaatgagcag 2400 agcatattct cccttggtgc aattctggta ccgccacgtg aagttaaaac atttagagct 2460 ccatggtaca gtcaaacacc tttgagacgt ccccttgatg atccaaacga accttctatg 2520 ggcttcttgt acgtctcttc agaggggact agtgacttca ctgtgtactt ggcacttcac 2580 aaacctaaat ttttctttcc tttgccatgc ccaatgttca ccagcaacca gtctagggaa 2640 gcaccaagac aaccaaaatc tattgctgag aggaaaattg agctctcctc agtggctcgg 2700 agaacacttg aatgggcccg cagagaagtg ggagccattg atgaaacaga ccacaaggac 2760 atcttacttg gaggagacat tgaggagaac ccaggcccac agagtgtgta cctgctcggc 2820 ttgtcaggct gtggcaaatc cagactcatc aatgccatcg ccgggcatcc actctgtgat 2880 agcagattga gcccaaatcc catccacaca gaaactcatt cacatcagct gatgggctat 2940 gagatattcg aacaggtggg tatgcctccc gctggcggga agtatgtcta cttgcaagag 3000 gccactagat tcgacaagga acatgtggat tacattaggg aaatggacaa attgcatcca 3060 ggatggcgca ggcacgccgt gctatatgtc aacaggcttg gggacacaaa actctcacaa 3120 tatctcagag gagttcctga gctggcaggt ttcaaggagg ccactgacaa ccctctcaat 3180 gtcatcccac ttctggtgtc aattgatact tatgtgggca ctggtgtcca acttgtctgt 3240 aaaaacagag gagtttacaa gcactttgga gttagagaag gagacaaggt ctaccatatc 3300 aacacagaga acctggtcaa gaccgctctt gatggtgaag tggctgtgat ggttgaagat 3360 tactcagatg gatggattcc atgtagccct gaagaaaaaa ttggagcagt ctcatttgta 3420 caaacaggaa cacttgatgg agttacattt tcatgtgact ttaattgtga gacatgggca 3480 aagatttttg tgccatctga aggcgaaact cagggccagc ggctgaagaa agtcatggcg 3540 atagctgctg gtgctgcttt tgtctatggg ttgcccagag gtgagggctt tgacttcatg 3600 cagtgtgtca ccaaggtgat gatgactctc ttctccaaac aagtaaaaac catagtggtc 3660 aaaatggtca tcaaattctt ttgtagactt tgttgctacc tggttctcta ctgccactct 3720 ccaaatttgg tcaacactgc catgcttact atccttttga cgctggacgt ctttgacaca 3780 gaaattgatg aaatatctgg aaaagtggcc aaagcattgg tctctgggga cttcaaggca 3840 gccggaagag caatgatgga ggcagctgac cgtaagtgtg aggactttaa gtgtgagggc 3900 aaaagaactc ttcaatctga aggaccagat gccacaggca agtctttcaa cacctggaca 3960 cttgtggcga aaaatctaga gtggtgggtt gacaagctga agcaattcat taactggatt 4020 aggaccaagt tgttccccag cgacgctaga gacaaaatag aagcaatgga atccgtgcgg 4080 gatcgcatgg ttttgtctct agctgcagct gataagcacc tggtcactct taaggctgac 4140 aaagcatatg ccactagcaa agctgccaga gattaccatc ttaagatcac aaatgaaatc 4200 attgacctca atgcaatgga tctagggcct gacttcagag atctgggaac caaaataggg 4260 caaattctca acagattgca gtcagtcacc tttgatagcg ttgatgctgg ttcaatgagg 4320 caggaacctc ttggtatctg gattagtgga gaacctggat gtggcaaatc cttcctctca 4380 catctgatca tcaaacacct caaggagaag aagggatttt cagtcttctg taacccatct 4440 ggatcagatc atatggatgg ctacaatgga caggagatcc actactttga tgacttgggg 4500 cagattagag aggaagctga cataaaattg atgtgccaat tgatctcatc tcaacaattc 4560 attgtgccca aagcagacct cacaagcaaa ggaactttgt acaatgctaa ggtggtgatt 4620 gcaacaacca acaagaatga atttgactca acagtgctca atgactcagg agctctcagg 4680 aggagattcc caattaggct gcatgtgcga ccccactcat tctactccac acaagatggc 4740 cgcctagacc tgaacagagc aatgaaagat ggcgacattg accctggatg ttgggaaata 4800 aatgttggaa ctggcaggag ttgttggcag actctcaact gggacattct aatccatgaa 4860 gtggaggatg aactcatcaa tcgtgagaac ataaataagt tcttctccca aggagccatt 4920 tttgaatctg atgaagtgga agtcatccct gaacagggac ctggatcagt caacaagtcc 4980 acggttacaa aacttaagaa ttggataaac tcactcattg acagagccaa gtctttcttt 5040 gaaaggaaca agtgctggtt ctacttggga tcagctctgg ctactttggc cactttggtg 5100 accacagctc ttccggccgc caggaattat ttgagcaact tgtattcagg cgagcctacc 5160 agggctaaag ttactagagt gacaagggag tttcagagcg aaggaccaag ttactattcc 5220 cttaaggaca gacttgtgga agttggtgag acaggttcca ccggattggc ccttggtgga 5280 aaagtggttc tttcatttgg acataatgac gactctaaat ttattaccta caaagatcag 5340 gagcacccag ttgtgaaaga agagaacatc tcagtcaaca actcacctca ggatttggca 5400 ctactcactg ttcaaacacc atatcaattt aaagagataa ggagaaaaat ctatgctgat 5460 gtgtacagtg gagatggttt tctgctattc cttaagaaag gcaccctcat tgcccaccaa 5520 gtgaagagga taacaccatg tgacaacatc atgacccaac aaggacacca gacacaattt 5580 gcctaccgtt atcaggtgaa ctcagctagc ggttggtgtg gtggagtttt ggttggaatt 5640 gtcgggggca atccaatgat attgggtatg catgttgctg ggaatggcag ccatggcatt 5700 gctgcaagaa ttttcccaaa cttcagtcag ggaatcgtaa cccagcgtat gccaaacacc 5760 gagctgtatt tccagccacg gaggtctgag atctacccat cccccgccaa tgatgggacc 5820 tctagtgtgg aaccaccagt tctgagcaat cgagacaaga gactggaaga acctattgat 5880 gacataacaa agcacaatgc agacagacac aagatgaaca ggttcaatcc tcccatggac 5940 gccttccaag ttgctaaggc caatgtcatc agtgagcttg caagtatagt ggctccatgt 6000 tatcacatga cttatgacca ggtggttgat tcatctctcc tacccattga ttggacaact 6060 tcaccaggat tggaattcaa gggtaaaacc aagaaacaac tgattgatga tccagcattc 6120 aaagaaagag tcatgaagct ctataaatca tttgctggtg gcaattctgc acctccccag 6180 gtgaaataca ccacttactt gaaggatgaa gtccgtagca aggagaaagt caagaagggt 6240 gctacccgga ccatcactgc tagctctttt gattacacca tagcgtgcag gatgatcttc 6300 ggtaacatct tcagacaact ctttggaaat ggacttccgg ctggattcgc cccaggaatg 6360 aacccataca cacaatttga tgagctttat gatagttgta ggttgaatgt catctgcctg 6420 gattactcta aatttgatgc ttccctaagt aaagaattga tggaacatgc aattgaggtt 6480 gtagcttgct tctcagaaga tccaatgagt gtcatcagag cttttcaacc aactctgatc 6540 tcacaagaga gggtgagcga tgaactgtgg gaagtgagag gttcaatgcc atcaggtagc 6600 ccatggacca caatgatcaa cacaatctgc aatctcctca tgtgcaaaac atatcttctt 6660 gacatgggtc atgacattac aaagacttat gtcgtctgct atggggatga ttgtgtgatt 6720 agtgtggacc agtgtcaccg actggaaggg attgaacaat ggttcatgga caaatttgga 6780 gctacagtaa caccagaaga caaatcaggg aagattaaat ggagrtttaa gaacaaactc 6840 aaatttctga aaagaacccc aatgcaattg gattggctac ctaaaattgt tggggcattg 6900 gacattgaca gcatgatgga tagaattcag tggaccaagg gacattttca ggaacaatta 6960 aattgcttct actatgaact ggctttgcat ggagaagaca cttacaatga ggctagaaga 7020 tctattgcct tcaggtgtcc tgaactagtg cacccaacat accattgtgc actggaaacc 7080 atcaaaccaa tggtcagtct catgtagggg ccactgatga ggattttttt ggtatgttta 7140 gaatcatcag atcttattca tttttagtat agaataagtt ttaggtacta taggattagt 7200 tattaggaat aggtagtata atctatagtt aattaggaat agttagttat agttttatag 7260 ttagtttagg tatgtctaag ttatccctaa tggatactta aagattaagt ctagattggc 7320 aagggatcct actccccggt attcggtacc cgtagtaccc cattggaaac tct 7373 //