ID KC610514; SV 1; linear; genomic RNA; STD; VRL; 4590 BP. XX AC KC610514; XX DT 19-MAR-2013 (Rel. 116, Created) DT 19-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Scheffersomyces segobiensis virus L isolate NRRL Y-11571, complete genome. XX KW . XX OS Scheffersomyces segobiensis virus L OC Viruses; Riboviria; Totiviridae; Totivirus. XX RN [1] RP 1-4590 RX DOI; 10.7717/peerj.50. RX PUBMED; 23638388. RA Taylor D.J., Ballinger M.J., Bowman S.M., Bruenn J.A.; RT "Virus-host co-evolution under a modified nuclear genetic code"; RL Peerj 1:e50-e50(2013). XX RN [2] RP 1-4590 RA Taylor D.J., Ballinger M.J., Bowman S.M., Bruenn J.A.; RT ; RL Submitted (12-FEB-2013) to the INSDC. RL Biological Sciences, State University of New York at Buffalo, 109 Cooke RL Hall, Amherst, NY 14260, USA XX DR MD5; 667b3fc160f6e22995943784221e3ec9. DR EuropePMC; PMC3628385; 23638388. DR EuropePMC; PMC4300635; 25378500. XX CC ##Assembly-Data-START## CC Assembly Method :: CLC Assembly Cell v. 4.0.6 CC Sequencing Technology :: Illumina; Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4590 FT /organism="Scheffersomyces segobiensis virus L" FT /host="Scheffersomyces segobiensis" FT /isolate="NRRL Y-11571" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jun-2012" FT /db_xref="taxon:1300323" FT gene 41..4542 FT /gene="pol" FT CDS join(41..1981,1981..4542) FT /codon_start=1 FT /ribosomal_slippage FT /gene="pol" FT /product="polyprotein" FT /db_xref="GOA:M4MG99" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR015302" FT /db_xref="InterPro:IPR036332" FT /db_xref="UniProtKB/TrEMBL:M4MG99" FT /protein_id="AGG68772.1" FT /translation="MSYQLFDQLTGPLANVLPNFKYLAKTVKYGIKADVDIGVTSEFTN FT AYKRRGALFTNVLSPFGVFNAEVVRDPPIFDGINARFFNDYGEIDERAIAETLRLKGTY FT RPNVIAELAPTIASCNSENHVSVLVNLLRFSIIKRSDPKDFKFVNDDLFYDDGHLAVSY FT KNYLKREFNEELVFIFREGIQIERFSESTVVGDDFYCPNIENLSAREFNILLTLLGSIK FT CDYPLRLAFSTPRLVDKLVLPLTTKHASYYEVVNDFTANEVDQIIRKYIFANRVETAFD FT LAYLIVVTAMFAPLPRAIEANGWVSPVNLIKLPNVGSVRGLMPEMTGGQPLSKSPQKAL FT TWLNYKQSPGRIAIHAIAACEAYYTGFFEVLTASPNGIEDTLTAIGVSSSVTATPYKMF FT CESAAYRFGKEFDLIWLTNAGVDCYSHLLATEPAALSILAKVVDTELEGYDVYTTSAFG FT EDTVHVITKEVKPALFPVLSMGINDDRYFANSLEYSATLYADHSEGVLATTESDHMNKA FT LSILRIGGYDAVMTDRLSGLSYRNWAANSNGQVLPMLPPKLKGKSTYVIPFNTIVKRKK FT SWMELGSLTDSVTMTAKINLRGYVIMTNGKLVSTYLPKYQTINVYPKSLNKEEMVAVEM FT KTSATTIKYRYSGFFVGCESSGSTTCPFTIIVYGHPWVAAHRNIERRGWCSGRRLGECR FT MSGLNYHNPVPLYVDENMAGTVPEKSRYVLVHVSNDDVPVHNIDYPMLIPYCGEYTIGK FT RIKRRNIVCWYAKLDFISIYTPKLMSIVGGYISGNIRSGMTVENHRDFYMEFDKVIFNK FT VTSDEIRELNEYVRSLDVTKITGDHHLFVNRQEVDTLLEEAMNLGKYNDRLAALMVLKD FT VASRIGIDNRVSFITHLVYILIAPPHAFVHLLSLIGESTDAEDYASILKRESGAAKQLQ FT TVFRSDLASLYELNVLVNRVDSVVDWNKEIDHRTNVKAVGISTEDVYKISTEIFKDAVR FT EGRYPQRLEWQDYWVQRWSAMPNGSVISQYDEDIAIKKLLPFSARVKSAWFAAKTESNY FT DYWLKRTPQIYASTSTKYEWGKVRALYGCDVTSFLHSDFGMTNCEDILPSYFPVGRKAN FT EKYVRESIEKFRETVPVCFDYDDFNSQHSTSSMRTVLQAWLDVNQKYLTEEQVNSVEWT FT RDSLDSILARFNSSGDTISLSGTLMSGWRLTSFMNTVLNRVYLVKANLFKHLVYALHNG FT DDMFGGAVNMAKAVAIIRDAKAIGVRAQVSKTNLGTIGEFLRVDTRAIDPTNAQYLSRS FT VATLVHGRVESSAPNDLRELVSAIITRSEEVISRGGDFRLINKLTQKTLDFAARLFNVD FT NTIIDTMLSNHPVQGGMNKDAPVHLWRIERRTEPFERETLLARYSLIAPGLFNYVDRVK FT EQFGVSENLIDKEELLYRAGVSLEKSRVYYELVIETTLGMDIYRALHGVWKSPGYVAPI FT AKIRSLGLIPAKELRNLNSVPAHLIRTARNPILMMGTIF" FT gene 41..2125 FT /gene="cap" FT CDS 41..2125 FT /codon_start=1 FT /gene="cap" FT /product="capsid" FT /db_xref="InterPro:IPR015302" FT /db_xref="InterPro:IPR036332" FT /db_xref="UniProtKB/TrEMBL:M4MKZ4" FT /protein_id="AGG68770.1" FT /translation="MSYQLFDQLTGPLANVLPNFKYLAKTVKYGIKADVDIGVTSEFTN FT AYKRRGALFTNVLSPFGVFNAEVVRDPPIFDGINARFFNDYGEIDERAIAETLRLKGTY FT RPNVIAELAPTIASCNSENHVSVLVNLLRFSIIKRSDPKDFKFVNDDLFYDDGHLAVSY FT KNYLKREFNEELVFIFREGIQIERFSESTVVGDDFYCPNIENLSAREFNILLTLLGSIK FT CDYPLRLAFSTPRLVDKLVLPLTTKHASYYEVVNDFTANEVDQIIRKYIFANRVETAFD FT LAYLIVVTAMFAPLPRAIEANGWVSPVNLIKLPNVGSVRGLMPEMTGGQPLSKSPQKAL FT TWLNYKQSPGRIAIHAIAACEAYYTGFFEVLTASPNGIEDTLTAIGVSSSVTATPYKMF FT CESAAYRFGKEFDLIWLTNAGVDCYSHLLATEPAALSILAKVVDTELEGYDVYTTSAFG FT EDTVHVITKEVKPALFPVLSMGINDDRYFANSLEYSATLYADHSEGVLATTESDHMNKA FT LSILRIGGYDAVMTDRLSGLSYRNWAANSNGQVLPMLPPKLKGKSTYVIPFNTIVKRKK FT SWMELGSLTDSVTMTAKINLRGYVIMTNGKLVSTYLPKYQTINVYPKSLNKEEMVAVEM FT KTSATTIKYRYSGFLLAASQVEAPPARLQLLSTDILGSQPIETSSEEAGAVGDDLESVE FT " FT CDS <1969..4542 FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:M4MEM7" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:M4MEM7" FT /protein_id="AGG68771.1" FT /translation="IPVFGFFVGCESSGSTTCPFTIIVYGHPWVAAHRNIERRGWCSGR FT RLGECRMSGLNYHNPVPLYVDENMAGTVPEKSRYVLVHVSNDDVPVHNIDYPMLIPYCG FT EYTIGKRIKRRNIVCWYAKLDFISIYTPKLMSIVGGYISGNIRSGMTVENHRDFYMEFD FT KVIFNKVTSDEIRELNEYVRSLDVTKITGDHHLFVNRQEVDTLLEEAMNLGKYNDRLAA FT LMVLKDVASRIGIDNRVSFITHLVYILIAPPHAFVHLLSLIGESTDAEDYASILKRESG FT AAKQLQTVFRSDLASLYELNVLVNRVDSVVDWNKEIDHRTNVKAVGISTEDVYKISTEI FT FKDAVREGRYPQRLEWQDYWVQRWSAMPNGSVISQYDEDIAIKKLLPFSARVKSAWFAA FT KTESNYDYWLKRTPQIYASTSTKYEWGKVRALYGCDVTSFLHSDFGMTNCEDILPSYFP FT VGRKANEKYVRESIEKFRETVPVCFDYDDFNSQHSTSSMRTVLQAWLDVNQKYLTEEQV FT NSVEWTRDSLDSILARFNSSGDTISLSGTLMSGWRLTSFMNTVLNRVYLVKANLFKHLV FT YALHNGDDMFGGAVNMAKAVAIIRDAKAIGVRAQVSKTNLGTIGEFLRVDTRAIDPTNA FT QYLSRSVATLVHGRVESSAPNDLRELVSAIITRSEEVISRGGDFRLINKLTQKTLDFAA FT RLFNVDNTIIDTMLSNHPVQGGMNKDAPVHLWRIERRTEPFERETLLARYSLIAPGLFN FT YVDRVKEQFGVSENLIDKEELLYRAGVSLEKSRVYYELVIETTLGMDIYRALHGVWKSP FT GYVAPIAKIRSLGLIPAKELRNLNSVPAHLIRTARNPILMMGTIF" XX SQ Sequence 4590 BP; 1361 A; 625 C; 1100 G; 1504 T; 0 other; gatatttttc atagcgcgta ttaaacccaa agcaattaaa atgtcttatc aattattcga 60 tcaattaact ggaccattgg ctaatgtctt gcctaatttc aaatatttgg ctaaaacagt 120 caaatatgga atcaaggccg acgttgacat tggtgtcact tctgaattca ctaatgctta 180 taagcgtcgt ggagctttat tcacgaacgt tttgagtcca tttggtgtct ttaatgcgga 240 agtagttaga gatcccccaa tttttgacgg gattaatgcg cggtttttta acgattatgg 300 tgaaatcgat gagcgagcta ttgcagagac gctcagactt aaaggtactt acagacctaa 360 tgttatcgca gaacttgcgc caactattgc gtcatgtaat tctgagaatc atgtttctgt 420 tcttgttaat ttgttgcgtt ttagtattat taagcggagt gaccctaaag attttaagtt 480 tgtcaatgat gatttatttt atgatgatgg gcacttggca gtatcttata agaattattt 540 gaaacgtgag tttaatgagg aattagtttt tatttttaga gaaggtattc aaattgagag 600 attttctgaa tctacggttg ttggtgatga tttttattgt cctaatatcg agaatttatc 660 agctagagag tttaatattt tgttgacttt gttgggatcg atcaagtgtg attatccttt 720 gagattggct tttagtacac caaggttagt agacaagttg gtattacctc ttactacgaa 780 gcatgcttcg tattatgagg tggttaatga ttttactgct aatgaggttg atcagattat 840 caggaagtat atttttgcaa atcgtgttga gactgctttt gatttagctt atttgattgt 900 ggttacagca atgtttgcac cactccctcg tgccattgag gcaaatgggt gggtgagtcc 960 tgttaacttg attaagttgc ctaacgttgg atcggttcgt gggttgatgc ctgaaatgac 1020 aggtgggcag cctttgtcga aaagtccaca aaaggctttg acttggttga attataagca 1080 atctcctggt cgtattgcga ttcatgcaat tgctgcatgt gaagcatatt acacaggttt 1140 ctttgaagtg ttgactgcta gtcctaatgg tattgaagat acgcttacag caattggagt 1200 gtcatcttct gtgacagcaa caccgtataa gatgttttgt gagtctgctg cttatcgttt 1260 tggtaaggaa tttgatctta tctggctgac aaatgctggt gttgattgtt attcgcactt 1320 gcttgcgact gaaccagctg ctttgtctat tttagcaaaa gtggttgata ctgagcttga 1380 aggttatgat gtatatacta ctagtgcttt tggtgaagat acggttcatg ttattactaa 1440 ggaagttaag cctgcgttgt ttcctgtttt gtcgatggga attaatgatg atcgttattt 1500 tgcgaattca cttgaatatt cagctacatt gtatgctgat catagtgaag gtgtgttggc 1560 aacaactgaa agtgatcata tgaataaggc tttatcaatt ttacgtattg gtggttatga 1620 tgcagtgatg actgataggt tgtcaggttt atcttatagg aactgggcgg ctaattcgaa 1680 cggtcaagtg ttgcctatgt taccacctaa gttaaaggga aagagcactt atgttatacc 1740 ttttaacaca attgttaaaa ggaagaagag ctggatggag ttaggtagtt tgactgattc 1800 tgtgacaatg actgcaaaaa ttaatttgag aggttatgtc attatgacta atggtaaatt 1860 ggtgtcaact tatttgccta agtatcaaac aattaacgtt tatccaaagt ctttgaataa 1920 ggaagagatg gtggcagttg aaatgaagac gagcgcaaca acaattaaat accggtattc 1980 gggttttttg ttggctgcga gtcaagtgga agcaccacct gcccgtttac aattattgtc 2040 tacggacatc cttgggtcgc agcccataga aacatcgagc gaagaggctg gtgcagtggg 2100 agacgacttg gagagtgtag aatgagtggt ttgaattatc acaatcctgt gccattatat 2160 gttgatgaga atatggcagg gacagtaccg gagaagtcaa ggtatgtatt ggtgcatgtt 2220 agtaatgatg atgtaccagt tcataatatt gattatccaa tgttaattcc atattgtgga 2280 gaatatacaa taggtaaacg tattaaacgt cgtaatattg tgtgttggta tgccaagctt 2340 gattttattt cgatatatac gccaaaattg atgtcaattg ttggaggcta tatttcaggt 2400 aatatcaggt cgggcatgac agtggagaat catcgtgatt tttatatgga gtttgacaaa 2460 gttatattta ataaggtgac aagtgatgag attcgtgaac ttaatgaata tgtgaggtct 2520 ttagatgtga caaagattac aggagatcat cacttatttg tgaacagaca agaagttgat 2580 acattgttgg aagaggcaat gaatttagga aaatacaatg atcgtttggc agcgttgatg 2640 gtattgaaag atgtggctag cagaataggt atagataatc gtgtgtcatt tataacacat 2700 ttggtttata ttttgatagc tccgccacat gcgtttgtac atttactatc tttgattggt 2760 gaatctacag atgctgaaga ttatgctagt attcttaagc gtgagagtgg tgctgcaaag 2820 caattacaga ctgtgtttag gagtgattta gcgtcgctat atgaattaaa tgtattagtg 2880 aatagagtgg attctgtggt tgattggaat aaagaaatag atcatagaac gaatgtgaag 2940 gctgtaggca ttagtacaga agatgtttac aagatttcaa cagaaatatt taaagatgca 3000 gtacgtgaag gaagatatcc acagcggtta gagtggcaag attactgggt tcaacggtgg 3060 tcagctatgc ctaatggttc ggttatcagc caatatgatg aagatattgc tatcaagaaa 3120 ttgttgccat ttagtgcaag ggttaagtca gcttggtttg ctgctaagac agaaagtaat 3180 tatgattatt ggttaaagag gacgcctcag atttatgctt ctacaagtac gaagtatgaa 3240 tggggtaaag tcagagcttt atatgggtgt gatgttactt cgtttttaca tagtgatttc 3300 ggcatgacta actgtgaaga tatattgcca tcttatttcc cagtggggcg taaggcaaat 3360 gaaaagtatg tgagagaatc aattgaaaag tttagagaaa ctgtacctgt gtgttttgat 3420 tatgatgatt ttaacagtca gcattctaca agtagtatga ggactgtgtt gcaagcgtgg 3480 cttgatgtta atcagaagta tttaactgaa gaacaggtga attcggtgga atggacgcgt 3540 gattcgctcg atagtatatt agcaagattt aactcttcgg gagacactat atcattgtca 3600 gggacattga tgagtggttg gcgattgaca tcgtttatga acacagtgtt gaatagagtg 3660 tatttagtta aagctaattt gtttaaacat ttagtatatg cattgcataa tggtgatgat 3720 atgtttggtg gtgcagtcaa tatggctaag gcagttgcta taattagaga tgctaaagct 3780 attggagtgc gtgctcaagt gtcaaagact aacttaggta caataggtga attcttgaga 3840 gtagatacga gagcaattga cccaacgaat gcacaatact tgagtcgaag tgttgcgaca 3900 ttagtgcatg ggcgtgttga gtcatcagca ccaaatgatt tgcgagagtt ggtgtctgct 3960 ataataacga gaagtgaaga agttattagt cgaggtggag attttagatt gatcaataaa 4020 ttaacacaaa aaacattaga ttttgcggca agattattta atgttgataa cactatcatt 4080 gacacgatgt tatcaaatca tccagtacaa ggtggtatga ataaagatgc gcctgtacat 4140 ctatggcgta ttgagaggag gacagagcct ttcgagagag agactttgtt ggcaaggtat 4200 tctctaatag cgccaggttt gttcaattat gttgataggg taaaagagca gtttggagtg 4260 agtgaaaatc ttatagataa agaggagttg ctttacagag caggtgtttc gttagaaaag 4320 tccagagtgt attacgagtt agtaatcgaa actacactag ggatggatat ctatcgtgca 4380 cttcatggag tatggaaaag ccctggttat gtggcaccta ttgcaaagat acgtagttta 4440 ggtttgatac ctgctaaaga attgcgtaat ttaaatagtg tgccagcaca tttaatcaga 4500 acagcgagaa atccaatact tatgatgggc acgatatttt agtaattaca gtatacagta 4560 aatcttgaat gtaattacta atatacagga 4590 //