ID   KC589007; SV 1; linear; genomic RNA; STD; VRL; 1876 BP.
XX
AC   KC589007;
XX
DT   20-MAY-2013 (Rel. 116, Created)
DT   20-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Lone Star virus isolate TMA 1381 segment S, complete sequence.
XX
KW   .
XX
OS   Lone Star virus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes;
OC   Bunyavirales; Peribunyaviridae; unclassified Peribunyaviridae.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1876
RX   PUBMED; 23637969.
RA   Swei A., Russell B.J., Naccache S.N., Kabre B., Veeraraghavan N.,
RA   Pilgard M.A., Johnson B.J., Chiu C.Y.;
RT   "The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus
RT   Found in the Amblyomma americanum Tick";
RL   PLoS One 8(4):E62083-E62083(2013).
XX
RN   [2]
RP   1-1876
RA   Swei A., Russell B.J., Naccache S., Veeraraghavan N., Pilgard M.A.,
RA   Johnson B.J.B., Chiu C.Y.;
RT   ;
RL   Submitted (07-FEB-2013) to the INSDC.
RL   Viral Diagnostics and Discovery Center, University of California, San
RL   Francisco, 185 Berry St, San Francisco, CA 94107, USA
XX
DR   MD5; 6a5216dc375806921558d81052587948.
DR   EuropePMC; PMC3639253; 23637969.
XX
CC   GenBank Accession Numbers KC589005-KC589007 represent sequences
CC   from the 3 segments of Lone Star virus isolate TMA1381.
CC   ##Assembly-Data-START##
CC   Assembly Method       :: PRICE v. 0.13
CC   Coverage              :: 2800
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1876
FT                   /organism="Lone Star virus"
FT                   /segment="S"
FT                   /host="Amblyomma americanum"
FT                   /isolate="TMA 1381"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Kentucky"
FT                   /isolation_source="tick found on Marmota monax"
FT                   /collection_date="20-Jun-1967"
FT                   /note="genotype: Kentucky"
FT                   /db_xref="taxon:1219465"
FT   CDS             38..781
FT                   /codon_start=1
FT                   /product="nucleoprotein"
FT                   /note="NP"
FT                   /db_xref="GOA:R4P2G7"
FT                   /db_xref="InterPro:IPR009522"
FT                   /db_xref="InterPro:IPR015971"
FT                   /db_xref="UniProtKB/TrEMBL:R4P2G7"
FT                   /protein_id="AGL50924.1"
FT                   /translation="MTSYSEILEEFGLSEIDNTQLARWEELFAYEGFDPVKMLAKMKKL
FT                   APDDWRDDVKIIIVFALTRGNKMSKAANKMSDKGKTELMRLKARYNLVENPQSRDDITP
FT                   TRVASALPTWTVRAAAALKDSLPMGPAAIKANAEKTIPAEMCCAAFAGVIPTSGIAEED
FT                   TEAITKAFFVWQYYFTQLINPQMRGKKKEVIFSSFDAAVRAAMNSASYPNKSRIDFLQG
FT                   LGILNQKKKAVESVRALAELWDEME"
FT   CDS             complement(908..1858)
FT                   /codon_start=1
FT                   /product="nonstructural S protein"
FT                   /note="NSs"
FT                   /db_xref="UniProtKB/TrEMBL:R4P4N4"
FT                   /protein_id="AGL50923.1"
FT                   /translation="MDDSVPKLPTLFEPVDDNLLIFGGYWRASKARAREGILKTLFRSM
FT                   GVAYPSLSGTFFSHCYFVDGSSIFRQMPKPYLLISAIMSCIPHGLGWTQEQRSSLRWPT
FT                   GKATTSWMSLAVRIFNFETPVEQCLSWKAFFKLLKRSTWDAPPGCTTADRIIILYEKCF
FT                   RRAKQLGICPTSIPTDSIIYYVAALQYLSFARAATRDLFMVPYCSVGPSVYEILQTLCW
FT                   FYPRKLPKRMRRDVDEYLRVKEDDPFDPYSSLLMTYHSGDRRRVSRPPGDQKEFLETLS
FT                   STESLLFFLETEDSFRLNYFSTSFGGDWPALPAAT"
XX
SQ   Sequence 1876 BP; 517 A; 448 C; 474 G; 437 T; 0 other;
     acacaaagag gccgctaata gagtacagga agtcagtatg acgtcttata gtgagatcct        60
     tgaggagttc ggactgtctg agatagacaa cactcagcta gcccgatggg aggaactctt       120
     tgcctatgag ggttttgacc ctgtcaaaat gctggcaaag atgaagaagc ttgcccctga       180
     tgactggagg gatgatgtaa aaatcatcat tgtctttgcc ttgacaaggg gcaacaaaat       240
     gagcaaggct gccaacaaga tgagtgataa gggcaagact gagctcatgc ggcttaaagc       300
     caggtacaat ctagtggaga atccccagag tagggatgac atcaccccca ctagagttgc       360
     atctgctctc ccaacctgga ctgtcagagc ggcagcagcc ctgaaggatt ccctccctat       420
     gggtccagct gccatcaagg caaatgcaga gaagaccatc ccagctgaga tgtgctgtgc       480
     tgcattcgct ggcgtaatcc ccacaagcgg gattgccgag gaggatactg aggctatcac       540
     caaagccttc tttgtgtggc agtactactt cacacagctg atcaaccctc agatgagggg       600
     aaagaagaaa gaggtgattt tcagttcttt tgatgctgcc gtgcgagctg ccatgaactc       660
     tgccagctac cccaacaaat cccgcatcga cttccttcag ggtcttggga tcttgaacca       720
     gaagaagaaa gcggtggagt ctgtaagggc tcttgcagag ctctgggatg agatggagta       780
     aacctttccc acccaaattc aatctggcta aatttcatca gctttccaat taggctaaat       840
     ttgccttcct ctccctgcct ttaggcaggg agaggggggc ttagagggga atcaaaagtc       900
     atagggatca ggtggcggca ggtagagctg gccagtcccc accgaaggag gtgctgaagt       960
     aattcaacct gaatgagtcc tcagtctcca agaagaatag taggctctcc gttgaggata      1020
     gggtttcaag aaattccttc tgatctccag gaggcctact aactctccga cgatcaccag      1080
     aatgataagt catcaagagg gaagaataag ggtcaaaagg gtcatcttcc ttaaccctca      1140
     gatattcatc aacatctcgt ctcattcgct tggggagctt cctaggatag aaccagcata      1200
     aggtttgcag tatctcataa actgaagggc cgacagagca gtaagggacc ataaagaggt      1260
     cccttgtggc tgcccttgca aaggacagat attgcagagc tgccacgtaa tagatgattg      1320
     aatcagttgg tattgatgtt gggcaaatac caagctgctt agctctccta aaacacttct      1380
     cataaagaat gatgattctg tcagcggtgg tgcagccagg aggagcatcc catgtggacc      1440
     tcttcaggag cttaaaaaat gccttccaag acaaacactg ttcaactggg gtttcaaagt      1500
     tgaagatccg cactgctaga gacatccagc ttgtcgtggc ctttccagta ggccacctca      1560
     gtgaagacct ttgctcctga gtccatccca acccatgtgg tatgcatgac ataatcgccg      1620
     agatcagaag gtacggctta ggcatctgcc tgaagatgct agatccatcc acaaagtagc      1680
     agtggctgaa gaatgtgcca ctcaggctag ggtaagcaac ccccatggat cggaataatg      1740
     ttttcagaat cccttccctg gcacgagcct tactagccct ccagtaacct ccaaagatca      1800
     gtagattgtc atccactggt tcaaacaaag taggtagttt tggtactgag tcatccatgg      1860
     tgcggcctct ctgtgt                                                      1876
//