ID KC589006; SV 1; linear; genomic RNA; STD; VRL; 3313 BP. XX AC KC589006; XX DT 20-MAY-2013 (Rel. 116, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Lone Star virus isolate TMA 1381 segment M, complete sequence. XX KW . XX OS Lone Star virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; unclassified Peribunyaviridae. XX RN [1] RC Publication Status: Online-Only RP 1-3313 RX PUBMED; 23637969. RA Swei A., Russell B.J., Naccache S.N., Kabre B., Veeraraghavan N., RA Pilgard M.A., Johnson B.J., Chiu C.Y.; RT "The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus RT Found in the Amblyomma americanum Tick"; RL PLoS One 8(4):E62083-E62083(2013). XX RN [2] RP 1-3313 RA Swei A., Russell B.J., Naccache S., Veeraraghavan N., Pilgard M.A., RA Johnson B.J.B., Chiu C.Y.; RT ; RL Submitted (07-FEB-2013) to the INSDC. RL Viral Diagnostics and Discovery Center, University of California, San RL Francisco, 185 Berry St, San Francisco, CA 94107, USA XX DR MD5; cad6c0982d5b97456b9e8a7e57e34b72. XX CC GenBank Accession Numbers KC589005-KC589007 represent sequences CC from the 3 segments of Lone Star virus isolate TMA1381. CC ##Assembly-Data-START## CC Assembly Method :: PRICE v. 0.13 CC Coverage :: 2900 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3313 FT /organism="Lone Star virus" FT /segment="M" FT /host="Amblyomma americanum" FT /isolate="TMA 1381" FT /mol_type="genomic RNA" FT /country="USA:Kentucky" FT /isolation_source="tick found on Marmota monax" FT /collection_date="20-Jun-1967" FT /note="genotype: Kentucky" FT /db_xref="taxon:1219465" FT CDS 454..3240 FT /codon_start=1 FT /product="glycoprotein precursor" FT /db_xref="GOA:R4P2Q0" FT /db_xref="InterPro:IPR009878" FT /db_xref="InterPro:IPR010826" FT /db_xref="UniProtKB/TrEMBL:R4P2Q0" FT /protein_id="AGL50922.1" FT /translation="MTIEGPMRIDCAAKQKGVGKTGHCNAKAFSLDPHNVRALGVQRSQ FT PGTVLSETQKDYVISERSAANPGVCTIDGSVINHCERKYPGSWKQMHYAFFQGPEGGLT FT FVAPTLNVVWMQDPRLSWAYYCKNISLHHLDHINPCRQNCTKETCQGDDLFCHEQGCTH FT DKACHCQHLPTFGMAKVLVGESWLIPFVVGVQEFFVVEELLGNPLLPRKCSTCSLTCTS FT EGISFHSIKDELKEITVCIEGSCSSRQGVGGKVWSIPFGNQMPRGGAQAVAQGLTMAGE FT AFSLSADCGVRSGCDQINCIFCTDMLSNPQCYPYGKWLLLCIMAGALYFVLSLSKFALQ FT MLLMLAQLLTSPLMLVWKVSKCLGRLGRRRTRRTYTRLLQAIEEGDAEPDITADVKRVD FT KPKKMPRIVVFALMLLTVVGATLACDETHLISETSVVCDATRASHYMCTTKEIVVLKNL FT RAGKTICISIKGPGGVISKPLKIVMEDIVGRADLLDAYYTFTGQANCKSVRRCRWAGTC FT SSGCSGVDKSSFVQELGASGLHSHPNWLDCYDGCGGAACGCFNAAPSCIFLQRYVTNKD FT ARVYKVFKTSAWFLNTRARVSVDDRTSGVTLKDGETKTIGKVSFSYRTDRNLFAGLSLP FT PIVSEIKASGKPNDFLFENQGSHPKCKDQNSAILSSSSGCIVDQNSITVNPRVDDVSCR FT SNLVSFNGMETLKPLPQRVGDFLVSFKGSEPVLLAVGSTNVVEGELRVDMSLKNFKIHV FT DGNICRGTLVSLKGCVGCSHGATANLKIHADKAGESSLECPSSSCRLKLEKGVNDLECS FT LRFSTPNVDETCVLVCSGSKEHLQVTGALLIGGDFKKLTDDSASNFEHSDSKTAGIHIG FT TGIGNWLSSLFGFSVTRWIIGIVGFILTFVVLVVCLKWLLFRVCRRSQPESDKDKIP" XX SQ Sequence 3313 BP; 906 A; 728 C; 848 G; 831 T; 0 other; acacaaagac gccagctact agcagagatg ttcccaactt tgagactctt ggcacttgcc 60 ctgatagttg cggcccatgg gggagaccta ccctgcgaca gagactggat aaaagaggga 120 aaaaatgaag agtacatcaa gaactctgtg aacttgtcaa gcacagaggg gttcagctac 180 tcagtcaagc tttgcttgat gagccttggc catcactggc gacttatcat agctcaagat 240 cacagtgttg aagaaaaggc tgtagatttc ctattacctt ctagccaggg atggagaggg 300 aatgagcaca caaggggagt caccctgttt cacccggaca tcatagatgg attcttctta 360 ggttggtttg acactaaatt ttatctctac agtgaggttg cagaaaggct accagttcct 420 cctggctgcc ataaagctaa gctttgctat ttcatgacta tagaagggcc catgaggata 480 gactgtgccg ctaagcagaa gggagtggga aaaactggac actgcaatgc aaaggctttc 540 tcattagacc ctcacaatgt gagagccctc ggagtacaga ggtctcagcc aggcacggtc 600 ctctcagaga cccagaaaga ctatgtcata agtgagagat cagctgccaa ccctggtgtt 660 tgcactattg atggatctgt aatcaatcac tgtgagagaa aatacccggg ctcctggaaa 720 cagatgcatt acgctttctt ccaaggccca gagggtggac tgacatttgt cgcccccact 780 ctcaatgtag tgtggatgca agatccaagg ctgagctggg catattattg caaaaacatt 840 tccctacacc acctggatca tataaaccct tgcaggcaga attgcacgaa ggagacttgc 900 caaggagacg acctcttttg tcatgagcaa ggatgtacac acgacaaggc atgtcattgc 960 cagcaccttc ccactttcgg catggccaag gtccttgtag gtgaatcatg gctgatccca 1020 tttgtggtgg gggttcaaga attttttgtg gtagaagaac tactaggaaa tcctctcttg 1080 cctagaaagt gttctacttg ttctctcaca tgtacaagtg agggcatatc gttccactca 1140 ataaaagatg agctcaaaga aatcacggtc tgtatagaag gatcctgctc ctcccggcaa 1200 ggagttggcg gcaaggtatg gagcatccca tttggaaacc aaatgcctag gggtggagca 1260 caagcagtgg cccaagggct aaccatggct ggagaggcat tcagcctatc tgcagactgt 1320 ggggttagat caggatgtga ccaaataaat tgcatcttct gcacggacat gctgagcaac 1380 ccacaatgtt atccgtatgg aaaatggttg ttattgtgca ttatggcagg ggccttgtat 1440 tttgtcctgt ctctaagcaa gtttgcactc cagatgctac taatgctagc tcagttactg 1500 acctctcccc tgatgctagt atggaaagtt tcaaaatgtc taggacgctt aggcagaagg 1560 aggacaagga ggacatacac cagactgctg caggctatag aagagggaga tgcagaaccg 1620 gacatcactg ctgacgtcaa gagagttgac aaaccaaaga aaatgcctag aattgttgtt 1680 ttcgcattga tgcttctcac tgtggtaggt gcaaccttgg cctgtgatga aacccaccta 1740 atttcagaga catctgtggt gtgtgatgcc acaagagcat cccactacat gtgcaccaca 1800 aaagagattg tggttctcaa aaatctcagg gcgggaaaaa ccatctgcat tagcatcaag 1860 gggccaggtg gggtgatctc aaaaccctta aaaattgtta tggaggacat tgtggggagg 1920 gccgacctgc tagatgctta ttacacattc actgggcagg ccaactgcaa gtctgtcagg 1980 aggtgcaggt gggcaggcac atgcagctct ggttgctccg gagttgataa gagctcattt 2040 gtgcaggagc taggggctag tgggttgcat tctcacccca actggctgga ctgttatgat 2100 ggctgtggag gagcagcttg tgggtgtttc aacgcagcac caagctgtat tttcttgcag 2160 agatatgtaa ccaacaagga tgccagagtt tacaaggtgt ttaaaacgtc tgcctggttt 2220 ttaaataccc gtgcaagagt ctctgtagat gatcgaacat ctggggtcac tcttaaagat 2280 ggagaaacaa agacaatagg aaaagtcagt tttagctata ggactgacag aaacctattt 2340 gcaggtctct cgctccctcc aattgtgtca gagataaagg cctctggtaa gcccaatgat 2400 ttcctctttg aaaaccaagg tagccaccct aaatgcaaag accagaattc agccatactg 2460 agcagctctt cagggtgtat agtggaccaa aatagcatca cagtgaatcc cagagttgat 2520 gatgtgtcct gccgctccaa tcttgtctca tttaatggaa tggaaaccct aaaaccacta 2580 ccccaaagag tgggagattt cttggtcagc ttcaaaggct cagaacctgt ccttctagca 2640 gttggcagca ctaatgttgt ggagggggaa ctaagagttg acatgtcact caaaaacttc 2700 aagatacatg tggatggaaa catatgcagg ggcacattag tgtcactcaa gggctgtgta 2760 ggctgttcac atggggctac tgccaacctg aaaatccacg ctgataaagc tggagagtcc 2820 tccctagaat gcccaagcag cagctgtaga ttaaagctag agaagggggt gaatgacttg 2880 gagtgctccc taaggtttag cactccaaac gtggatgaaa cttgtgtttt ggtctgctca 2940 ggttccaagg agcacttgca ggtcactggt gctctgctaa tcggggggga cttcaagaaa 3000 ttgacagatg actctgcatc taacttcgaa cattcagatt caaaaacagc agggatccat 3060 atagggactg gcattggaaa ctggctgtcc tcactctttg gatttagtgt caccagatgg 3120 atcattggaa tagtcggttt catccttact tttgttgttc tggtggtttg cctgaaatgg 3180 cttttgttca gggtatgtcg gcgctcccag ccagaaagtg acaaggataa gatcccttaa 3240 cactattctg gttcttgcac tagtctgtgc cctcacttag gtgggggttc aggaatgctg 3300 gcggtctttg tgt 3313 //