ID KC572000; SV 1; linear; genomic RNA; STD; VRL; 5763 BP. XX AC KC572000; XX DT 13-JUN-2013 (Rel. 117, Created) DT 07-JUL-2013 (Rel. 117, Last updated, Version 2) XX DE Barley yellow dwarf virus Ker-II isolate K465, complete genome. XX KW . XX OS Barley yellow dwarf virus kerII OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5763 RX PUBMED; 23825645. RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.; RT "Distribution of Barley yellow dwarf virus-PAV in the Sub-Antarctic RT Kerguelen Islands and Characterization of Two New Luteovirus Species"; RL PLoS One 8(6):E67231-E67231(2013). XX RN [2] RP 1-5763 RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.; RT ; RL Submitted (01-FEB-2013) to the INSDC. RL UMR 1332 Biologie du Fruit et Pathologie, INRA, 71 Avenue Edouard RL Bourleaux, Villenave d'Ornon Cedex, CS 20032 33883, France XX DR MD5; cafbd8795ef1e5c0b9c2b7771c79cd7f. DR EuropePMC; PMC4422679; 25946037. XX CC ##Assembly-Data-START## CC Assembly Method :: Mega v. 5.02 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5763 FT /organism="Barley yellow dwarf virus kerII" FT /host="Poa cookii" FT /isolate="K465" FT /mol_type="genomic RNA" FT /country="France:Kerguelen Islands Chionis" FT /collection_date="2009" FT /PCR_primers="fwd_seq: gaaagggtccggcactttgacaggag, rev_seq: FT gaaagggtccggcactttgacaggag" FT /db_xref="taxon:2169987" FT 5'UTR 1..154 FT gene 155..2757 FT /gene="ORF1" FT CDS join(155..1171,1171..2757) FT /codon_start=1 FT /ribosomal_slippage FT /gene="ORF1" FT /product="RNA-dependent RNA polymerase P1-P2 fusion" FT /db_xref="GOA:R9UHA3" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:R9UHA3" FT /protein_id="AGN54066.1" FT /translation="MVFFELLIGASVKAVKDFISHCYSRLKSIYYSLKRWLWEIQGKFK FT AHDAFVNMCYGHMADIEDFEIPLADEFVASEEELAMAQAKLKYMVALEAESGVEDAYTQ FT LCIKKGYHSLTTMAKPTKGELAASTEALEAKISSHYSLIANTNREYIKNKGKGYINTFN FT SLFNRLHFVKKEADLAKENEDAAWKMQQQLFSVENIQELHDFTEVAREENGCKKMITKL FT VNNEEIQEEVPVKVEVRRIKCSEQAREKAAIWIRAYIKVKNSTLTADELSMATISKYVE FT NLCEKHSMSAESRTYLTKCACLMVPLPTREEIDIKMTIQSPAARSRREQIEILDAQGFL FT NGLCTESGFESPFSILGLPEISVTDGARLRKQSSRIRFLSQTSLGLVFQAPNASLHNAL FT VAIERRVLTVGKGSEITLPPRPEQEIFTESMKYFSDEIVNHVGYCKVYSPEALAMSYHA FT GKRSQYFKAIESLKVRPYEEKDARVTAFLKKEKHWMIKPIAPRLICPRSKRYNIILGTH FT LKFNEKKIMHAIDGVFGSPTVLSGFDSFQQGRVIAKKWQKFTNPVAIGVDASRFDQHVS FT EQALKWEHSIYKDIFNNPILELALSHQLKNDISMFVEDKMLRFKVEGHRMSGDINTSMG FT NKLIMCGMMHAYFKSLNVEAELCNNGDDCVIICERKDEAKFSGMYDFFLRYGFNLVTEH FT PVYELEQLEFCQSKPVCVNGRYRMVRRPDCMSKDSHTLLSMLGPEDVKSYMSAVAQCGL FT VLNSGVPILESFYECLYRSSGYKKVSEAFIKNVISYGTEERLQGRRARQIEPITLGTRL FT SYWESFGVDPRTQEIVERYFNGLQISTQLQRVKVTTPHLQSILLSIPEKPPPATQ" FT CDS 155..1174 FT /codon_start=1 FT /gene="ORF1" FT /product="RNA-dependent RNA polymerase P1" FT /db_xref="GOA:R9UDU8" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:R9UDU8" FT /protein_id="AGN54065.1" FT /translation="MVFFELLIGASVKAVKDFISHCYSRLKSIYYSLKRWLWEIQGKFK FT AHDAFVNMCYGHMADIEDFEIPLADEFVASEEELAMAQAKLKYMVALEAESGVEDAYTQ FT LCIKKGYHSLTTMAKPTKGELAASTEALEAKISSHYSLIANTNREYIKNKGKGYINTFN FT SLFNRLHFVKKEADLAKENEDAAWKMQQQLFSVENIQELHDFTEVAREENGCKKMITKL FT VNNEEIQEEVPVKVEVRRIKCSEQAREKAAIWIRAYIKVKNSTLTADELSMATISKYVE FT NLCEKHSMSAESRTYLTKCACLMVPLPTREEIDIKMTIQSPAARSRREQIEILDAQGF" FT gene 2872..4893 FT /gene="ORF3" FT CDS 2872..4893 FT /codon_start=1 FT /transl_except=(pos:3460..3462,aa:OTHER) FT /gene="ORF3" FT /product="aphid transmission protein P5" FT /note="created by ribosomal read-through of the ORF3 stop FT codon" FT /db_xref="GOA:R9UFV9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R9UFV9" FT /protein_id="AGN54067.1" FT /translation="MNSVGRRRASKNVRARRNRTVRPVVVVRTNPNGRRRRAARPARRG FT RPNPILGPAGRSEIFVFSINDIKANSSGVIKFGPDLSQCPALSNGILKSYHRYKISNVK FT IEFKSHASSTTVGAMFIELDTACTQSTLGSYINSFTLSKSGTKTFNAQQIAGKEFRETS FT VNQFYVLYKANGVSSDTAGQFIITLRVSNMTPKXVDSSTPEPGPKPKPDPTPTPAPKAP FT MRFFEYIGTPTGTIQSRETSDSISVSKLGDQAFQKIENERSNDVFLSSYWQYSNSVYAQ FT AAFVIPIYKGSYSVNISCEGMQSVDHIGGEQDGFWIGLVAYSNSTDDVWGVGNYKGCTI FT SNYLLTNSWRPGHKDLKLNDCAFDQGQVVERDAVISFHVEAVGENPSFYLLAPKTQKTD FT KYNYIVSYGGYTNKKMEFGTISITCDESDVEALRIARHANQAVKENHQQISYGLGNLLP FT PYSPDRVEVYPDITSSERTVETRPSEKTTFQHFTQEEIEEIDLYNLATSEIPDAEQDVL FT PTKQELSRKPIDSLGTQIPRPRSMSPEYPRPRSLSPENPRPMSRSPEYSRPKSRSPEPI FT GTYNSQNIYDDDLPPAMARRLREVADLPSTMLYNQKPKNTRSSMLSRFIEKNKTPDATA FT PSEATTSRMTRDQLKEYTRIRNQFGLTRAKEYKASLGL" FT CDS 2872..3462 FT /codon_start=1 FT /gene="ORF3" FT /product="coat protein P3" FT /db_xref="GOA:R9UEM3" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:R9UEM3" FT /protein_id="AGN54068.1" FT /translation="MNSVGRRRASKNVRARRNRTVRPVVVVRTNPNGRRRRAARPARRG FT RPNPILGPAGRSEIFVFSINDIKANSSGVIKFGPDLSQCPALSNGILKSYHRYKISNVK FT IEFKSHASSTTVGAMFIELDTACTQSTLGSYINSFTLSKSGTKTFNAQQIAGKEFRETS FT VNQFYVLYKANGVSSDTAGQFIITLRVSNMTPK" FT gene 2906..3364 FT /gene="ORF4" FT CDS 2906..3364 FT /codon_start=1 FT /gene="ORF4" FT /product="movement protein P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R9UHI6" FT /protein_id="AGN54069.1" FT /translation="MSEPGAIEQFGQWLWSGPIQMDDDAEPLDQQEEEGQILYLDQQAG FT LRYSYSQSTILKPTPQGSSNSAPIFHNVQRFQTEFLSPTTVTRSQMSRSSLSHTRPPLQ FT SAQCLLNSTLRAHNQPWVATLTHSPSPSREPKRLMPSKSRAKNSGRLR" FT gene 5023..5133 FT /gene="ORF6" FT CDS 5023..5133 FT /codon_start=1 FT /gene="ORF6" FT /product="P6" FT /db_xref="UniProtKB/TrEMBL:R9UDV3" FT /protein_id="AGN54070.1" FT /translation="MGGLEVIATCLVANVFLQAVNTIVNTCICVGAIVAT" FT 3'UTR 5131..5763 XX SQ Sequence 5763 BP; 1733 A; 1414 C; 1266 G; 1350 T; 0 other; agtgaagatt gacccttcac taaagttctc ttgtgctaga gagacgcggc tcaccctttt 60 tgtcttaggg aagtcgtttg caaaggtcac agcgtcgcct gactcgccgc tgccgccccg 120 ccctctcacc tttctacccc ttccacctcc catcatggtt ttctttgaac ttctgatagg 180 tgctagtgta aaggccgtca aggatttcat ctcccactgc tatagccgtc ttaaatcaat 240 atactactct ttgaagagat ggctttggga gatacagggc aaatttaagg cccacgacgc 300 attcgtcaac atgtgttatg gacacatggc ggatatagag gacttcgaaa ttcctctagc 360 tgacgaattt gttgcgtcag aagaagagct agccatggct caagcaaaac ttaagtatat 420 ggtagccctg gaagctgaat ccggtgtaga agatgcctac acccaactat gcatcaagaa 480 agggtaccat tcactcacca ccatggctaa gccgacaaaa ggcgaactag cagcctctac 540 tgaggcccta gaagcaaaga tttcaagtca ctactccctc atcgccaaca ccaataggga 600 gtacatcaag aacaaaggga agggatacat caataccttc aattcccttt ttaaccgcct 660 gcactttgtc aagaaggaag ctgacttggc aaaggaaaac gaagatgcag catggaagat 720 gcagcagcag ctcttttctg tagaaaacat acaggagctg catgacttca ccgaggttgc 780 tcgtgaagaa aatggctgca aaaaaatgat caccaagctc gtcaacaacg aggagataca 840 ggaggaggtt cctgtaaaag ttgaagttcg cagaatcaag tgctctgagc aagccagaga 900 aaaagctgcc atctggatta gggcctacat caaggtcaaa aattcaactt taactgcaga 960 cgaactttcc atggcaacaa tctccaaata tgttgaaaat ttatgtgaga agcatagcat 1020 gtctgctgaa agccgcacat acctcacgaa gtgcgcctgc ctgatggtcc ccctgcccac 1080 acgcgaggaa atcgacataa aaatgaccat ccaatcccct gctgctcgtt ctagacgcga 1140 gcagattgaa attcttgatg ctcagggttt ttgaatgggc tctgtaccga gtcaggtttt 1200 gaaagcccct tttcaatact tggcttgcct gaaatctcgg tcacagacgg agcccgccta 1260 cgtaagcagt ctagtagaat tcgtttctta tcgcaaacta gtttaggatt agtttttcaa 1320 gcccccaacg caagcctaca caatgcactc gtagcaattg aaaggagagt tctcaccgtt 1380 ggaaaaggaa gcgagataac cctccctccg agaccagagc aagaaatttt cactgaatct 1440 atgaaatact tctcggatga aattgtaaat catgtgggtt attgtaaggt ttactctccc 1500 gaagctcttg ccatgagcta ccatgccgga aaaaggtcac aatattttaa ggcaattgag 1560 tccctcaaag ttcgaccata tgaagagaag gacgcccgag ttactgcctt tctcaagaag 1620 gagaaacatt ggatgatcaa gcccattgcc cccagactca tatgccccag aagcaaacga 1680 tacaatatca tcctggggac tcacctcaaa ttcaatgaaa agaagatcat gcacgccatt 1740 gatggtgtgt ttggatcccc cacagtactt tcaggtttcg actcatttca acaaggaagg 1800 gtgattgcca aaaagtggca gaaattcacc aaccctgttg ctatcggagt tgacgccagc 1860 cggtttgacc aacacgtgtc tgaacaggct ctgaagtggg aacatagcat ctacaaagat 1920 atattcaaca atccaattct cgaattggca ctgtcacatc aattgaaaaa tgatatatct 1980 atgtttgtag aagacaaaat gttgaggttc aaagttgaag ggcatcgcat gtccggcgat 2040 attaacacaa gcatggggaa taagcttatt atgtgtggaa tgatgcatgc ttatttcaaa 2100 tccctaaacg tcgaagcaga actttgtaac aacggagacg attgtgtcat aatctgtgag 2160 aggaaagacg aagccaaatt ttctggcatg tacgacttct ttctcaggta tggattcaat 2220 ctggttactg aacaccccgt ttacgaactt gaacagctag agttctgcca atcaaaacct 2280 gtttgtgtca atggaagata tagaatggta cgaagacctg actgcatgtc aaaagacagc 2340 cacaccttgt tgagtatgct cggcccagag gacgtcaagt cctacatgtc agccgttgct 2400 cagtgtgggc ttgtcttgaa ttcaggcgta cccattcttg aaagttttta cgagtgcttg 2460 taccgaagta gcggttataa gaaagtatct gaggcgttca tcaaaaacgt catatcctat 2520 ggtacggagg aaaggcttca gggtagacgt gcccgccaaa tcgagcctat taccttagga 2580 acaagactca gctactggga atcatttgga gttgatccga ggacacaaga aatcgttgag 2640 aggtacttta acggtcttca gatcagtact cagctccaaa gagtgaaggt gacaactcca 2700 catctgcaat caatccttct ctcaatccca gagaaaccac cacccgctac acaatagatt 2760 ttcatttcct taccggctta ggaataggtt tcattttagc aataccttgt acattagctc 2820 tcgtgtattt catttacaat aaagtttcag acaccactag agaggtggtg aatgaattca 2880 gtaggccgta gaagagcaag caaaaatgtc agagccaggc gcaatagaac agttcggcca 2940 gtggttgtgg tccggaccaa tccaaatgga cgacgacgcc gagccgctcg accagcaaga 3000 agaggaaggc caaatcctat acttggacca gcaggcaggt ctgagatatt cgtattctca 3060 atcaacgata ttaaagccaa ctcctcaggg gtcatcaaat tcggccccga tctttcacaa 3120 tgtccagcgc tttcaaacgg aattcttaag tcctaccacc gttacaagat ctcaaatgtc 3180 aagatcgagt ttaagtcaca cgcgtcctcc actacagtcg gcgcaatgtt tattgaactc 3240 gacactgcgt gcacacaatc aaccttgggt agctacatta actcattcac cctctccaag 3300 tcgggaacca aaacgtttaa tgcccagcaa atcgcgggca aagaattccg ggagacttcg 3360 gtgaaccagt tttatgtgtt gtataaagct aacggtgtgt catcggacac agcaggacaa 3420 ttcatcatca ccttgcgggt ttcaaacatg actcccaaat aggtagactc ctcaacacca 3480 gaacccggcc caaagcctaa accagacccc acacctaccc cagcaccaaa agcacccatg 3540 agatttttcg agtacatcgg aacaccaaca ggaacaatcc aatctcggga aacatcggac 3600 agcatttctg tgtccaagct gggagatcag gcattccaaa agatcgagaa cgagaggtcc 3660 aatgacgtct ttctctcgtc ttactggcaa tacagtaaca gtgtctacgc tcaagcagcc 3720 tttgtgattc ccatctacaa aggtagttac agtgtaaaca tatcatgtga aggaatgcaa 3780 tctgttgatc atataggagg ggaacaagat ggattttgga taggtttagt agcctattcc 3840 aattccactg atgacgtctg gggcgtcggg aattacaaag gttgcacaat ctccaattac 3900 ctcctcacca actcatggag gccaggtcac aaggacctca agcttaatga ttgtgcattc 3960 gaccaaggcc aagtcgtaga aagagacgca gtcatatcgt tccatgtgga agctgtcggt 4020 gaaaacccca gtttctactt actagcacca aaaacgcaaa agactgacaa atataattat 4080 atcgtctcct acggtggcta caccaacaag aaaatggaat ttggaacaat atccattact 4140 tgtgatgaat ctgatgttga ggcactccga attgcaaggc acgcaaatca agccgtaaag 4200 gaaaaccatc aacaaatttc ctacggtttg ggtaacctgc taccccccta ctctcctgat 4260 agagtagaag tctatcctga tatcactagc tctgagcgaa cggttgaaac ccgtcctagt 4320 gagaagacca cattccaaca ttttactcag gaagaaatag aagagatcga cctgtacaat 4380 ctcgccacct ctgaaatacc tgacgcagaa caagatgttt tgcccaccaa gcaagaattg 4440 agcagaaagc caattgatag cttgggcact caaattccac gtcctaggtc catgtctccg 4500 gagtaccccc ggccacggtc cttgtctcca gagaatcctc gaccaatgtc gcggtctccg 4560 gagtatagcc gaccaaaatc acggtctccc gaaccaattg gaacctacaa tagccaaaac 4620 atctatgatg acgacctccc ccctgcaatg gcccggaggc tcagagaggt tgcagattta 4680 ccatccacca tgctctacaa ccaaaaaccc aaaaatacta ggtctagcat gctttctcga 4740 tttatagaga aaaataaaac accagatgct accgcccctt ccgaggccac aacctcgcga 4800 atgacccgag accaattgaa agaatacact cgtattagaa accaatttgg tctgacccgg 4860 gctaaggaat acaaggcttc actcggattg tgaaggtgaa agactgcacc ctttcacact 4920 acccaccact ggcaaaagac ggatcctggg aaacaggcag tgcctaggca cgtaagctcg 4980 gggatactag tcatatcccg acgtatcact tttgtctggt cgatgggtgg cctggaggtc 5040 attgctacct gtttggtagc aaatgtattt cttcaagcgg tcaataccat tgtaaataca 5100 tgcatctgtg ttggcgctat tgtcgccaca taaaccaaaa acgccactgt gctgtgagca 5160 gaggcactac aaaaacaaag aagggagcca ttggctcagg aaagaggcta atcacctcat 5220 gacaggctgg tctaggtgga cttaaataac ccaccgcaag acaactggaa accaaccagc 5280 gatcaaataa ggtagcttgc ttctgagtta tacactgccc cagtaacgcc tgggtaaaca 5340 aagcttcaca ccactccgat gagaagagga gagagtgtgc ggggttaggg atcccgtgac 5400 ataccctaga tcgtcgtggc ttggggacgt taaaacgcac gaccttatca tgtcgttaaa 5460 ccgattaaga ccttatcaag tcgttaaact gatagtcatc tcccgagtga tgacccccac 5520 taatgactta taggaacgat acgaaacgtt ctactacccg atgccggaac cccctcgcgg 5580 tcggcctgga tgagaaacca ggattacatc cggtagttgg ctcgaatggc catagcacaa 5640 gtcaggttca gggaaagata cttcggaagc gcgcctatgc aggcctctga gttgccaacc 5700 ggcaagacaa ctcatgagta ttttcactgg taacagtgaa agggtccggc actttgacag 5760 gag 5763 //