ID KC571999; SV 1; linear; genomic RNA; STD; VRL; 5736 BP. XX AC KC571999; XX DT 13-JUN-2013 (Rel. 117, Created) DT 07-JUL-2013 (Rel. 117, Last updated, Version 2) XX DE Barley yellow dwarf virus Ker-II isolate K439, complete genome. XX KW . XX OS Barley yellow dwarf virus kerII OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5736 RX PUBMED; 23825645. RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.; RT "Distribution of Barley yellow dwarf virus-PAV in the Sub-Antarctic RT Kerguelen Islands and Characterization of Two New Luteovirus Species"; RL PLoS One 8(6):E67231-E67231(2013). XX RN [2] RP 1-5736 RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.; RT ; RL Submitted (01-FEB-2013) to the INSDC. RL UMR 1332 Biologie du Fruit et Pathologie, INRA, 71 Avenue Edouard RL Bourleaux, Villenave d'Ornon Cedex, CS 20032 33883, France XX DR MD5; 9662d66a89485c594fcba80e379b90de. DR EuropePMC; PMC4422679; 25946037. XX CC ##Assembly-Data-START## CC Assembly Method :: Mega v. 5.02 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5736 FT /organism="Barley yellow dwarf virus kerII" FT /host="Poa cookii" FT /isolate="K439" FT /mol_type="genomic RNA" FT /country="France:Kerguelen Islands TC13" FT /collection_date="2009" FT /PCR_primers="fwd_seq: agtgaagattgacc, rev_seq: FT gctcttgtgtccaccttac" FT /db_xref="taxon:2169987" FT 5'UTR 1..154 FT gene 155..2757 FT /gene="ORF1" FT CDS join(155..1171,1171..2757) FT /codon_start=1 FT /ribosomal_slippage FT /gene="ORF1" FT /product="RNA-dependent RNA polymerase P1-P2 fusion" FT /note="RdRp" FT /db_xref="GOA:R9UDU5" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:R9UDU5" FT /protein_id="AGN54060.1" FT /translation="MVFFELLIGASVKAVKDFISHCYSRLKSIYYSLKRWLWELQGKFK FT AHDAFVNMCYGHMSDIEDFEIPLAGEFEVREGDLEIARAKLALLIAQHSDIGVTEAYGK FT YASLTGSIPVPEDYKPSVKELGSAADSVESLISEHLQAAREASKIYIKEKGVGFINSFN FT SLKARFKHVKEQTLLFKHNEEAASKIKQQLFAVENIDELHNFTEVTQEENGLKKTIIKE FT VNGEEQYFEMPIKVDVRRIKDTPVDREKAATWIRAYIKAKNSSLTADELSFATIPKYIE FT NLAAKHDLSAESRTYLTKCALIMVPLPTSEEIAIKMTVQSPAARSRREQIEILDARGFL FT DGLCSETGFESPFSELGLPEISVTDGARIRKQSSKIHFLSQTSLGLVFQAPNASLHNAL FT VAVERRVFTVGKGNEITLPPRPELDIFTESMKYFSDEIVNQVGCCKVFSPEFLAFSYSS FT GKRSQYLKAIESLKMKPYEEKDSHVTAFLKKEKHWMTKPIAPRLICPRTKRYNIILGTH FT LKFNEKKIMHAIDCVFGSPTVLSGFDSFQQGKVIARKWRKFSNPVAIGVDASRFDQHVS FT EQALMWEHSIYNDIFNDPFLKTALSHQLNNNILMFVDDKMLRFKVKGHRMSGDINTSMG FT NKLIMCGMMHAYFKSLNVDAELCNNGDDCVIICERKDEAKFAGMYDFFLKYGFNLVTEH FT PVYELEKLEFCQSRPVCVNGKYRMVRRPDCISKDSHTLLSMLGQEDVKSYMSAVAQCGL FT VLNSGVPILESFYECLYRSSGYKKVSEEYIKNVISYGTEERLQGRRARQIEPITLGTRL FT SYWETFGVDPRTQEIVERYFNSLTISTQLQRVKVTTPHMQSILLSIPEKNPPATQ" FT CDS 155..1174 FT /codon_start=1 FT /gene="ORF1" FT /product="RNA-dependent RNA polymerase P1" FT /db_xref="GOA:R9UHH5" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:R9UHH5" FT /protein_id="AGN54059.1" FT /translation="MVFFELLIGASVKAVKDFISHCYSRLKSIYYSLKRWLWELQGKFK FT AHDAFVNMCYGHMSDIEDFEIPLAGEFEVREGDLEIARAKLALLIAQHSDIGVTEAYGK FT YASLTGSIPVPEDYKPSVKELGSAADSVESLISEHLQAAREASKIYIKEKGVGFINSFN FT SLKARFKHVKEQTLLFKHNEEAASKIKQQLFAVENIDELHNFTEVTQEENGLKKTIIKE FT VNGEEQYFEMPIKVDVRRIKDTPVDREKAATWIRAYIKAKNSSLTADELSFATIPKYIE FT NLAAKHDLSAESRTYLTKCALIMVPLPTSEEIAIKMTVQSPAARSRREQIEILDARGF" FT gene 2872..4875 FT /gene="ORF3" FT CDS 2872..4875 FT /codon_start=1 FT /transl_except=(pos:3460..3462,aa:OTHER) FT /gene="ORF3" FT /product="aphid transmission protein P5" FT /note="created by ribosomal read-through of the ORF3 stop FT codon" FT /db_xref="GOA:R9UHA0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R9UHA0" FT /protein_id="AGN54061.1" FT /translation="MNSVGRRRASKNVRARSNRTVRPVVVVRTNPNGRRRRAPRRPRRG FT RANPILGPAGRSEVFVFSINDIKANSSGVIKFGPDLSQCPALSSGILKSYHRYKISNVK FT IEFKSHASSTTVGAMFIELDTACTQSTLGSYINSFTLSKSGTKTFNAQQIAGKEFRETS FT VNQFYLLFKANGVTSDTAGQFIITLRVSNMTPKXVDSSTPGPGPKPKPDPTPTPAPEPK FT TPKRFFEFIGTPSGVIQTRESSDSISVSKLGDQTFQKIENEKSNDVFLSSYWQYSNSVY FT AQAAFVIPIYQGSYSVNISCEGMQSVDHIGGEQDGYWIGLIAYSNSTDDVWGVGNYQGC FT TITKYLVTNSWRPGHQDLKLNDCAFDKGQIVERDAVLSFHVEAVGDNPSFYLLAPKTQK FT TDKYNYVVSYGGYTNKKMEFGTIAITCDESDVEALRNARHANYPIKENHQELYHGSGTL FT LPAYSPDRVEVYPDITSSERTVQPRPSEEPKFRDIQNQEELSSLFDLYDLATSEIPDAR FT EDVLPTKQEMSKKPIDSLGTEIPRPRSMSPEYPRPRSRSPEYPRPRSRSPEPIGTYHGQ FT NIYDDDVPKQVAERLREAAELPSTMLYNRKPKNRNSSFLSRFIEQNKSPDATAPSEATT FT SRMTRDQLKEYTRVRNQYGLTAAKQYKASLGQ" FT CDS 2872..3462 FT /codon_start=1 FT /gene="ORF3" FT /product="coat protein P3" FT /db_xref="GOA:R9UFV4" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:R9UFV4" FT /protein_id="AGN54062.1" FT /translation="MNSVGRRRASKNVRARSNRTVRPVVVVRTNPNGRRRRAPRRPRRG FT RANPILGPAGRSEVFVFSINDIKANSSGVIKFGPDLSQCPALSSGILKSYHRYKISNVK FT IEFKSHASSTTVGAMFIELDTACTQSTLGSYINSFTLSKSGTKTFNAQQIAGKEFRETS FT VNQFYLLFKANGVTSDTAGQFIITLRVSNMTPK" FT gene 2906..3364 FT /gene="ORF4" FT CDS 2906..3364 FT /codon_start=1 FT /gene="ORF4" FT /product="movement protein P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R9UEL9" FT /protein_id="AGN54063.1" FT /translation="MSEPGAIEQFGQWLWSGPIQMDEDVEPLDAQEEEGQILYLDQQAG FT LRYSYSQSTILKPIPQGSSNSAPIFHNVQRFQAEYLSPTTVTRSQMSRSSLSHTRPPLQ FT SALCLLNSTPRAHNQPWVATLTHSPSPSQEPKRLMPSKSLAKSSGRRR" FT gene 5005..5115 FT /gene="ORF6" FT CDS 5005..5115 FT /codon_start=1 FT /gene="ORF6" FT /product="P6" FT /db_xref="GOA:R9UHI0" FT /db_xref="UniProtKB/TrEMBL:R9UHI0" FT /protein_id="AGN54064.1" FT /translation="MGGLEVIAVCMIAIVFLQAVGTIVNMCICVGAIAAA" FT 3'UTR 5113..5736 XX SQ Sequence 5736 BP; 1714 A; 1392 C; 1252 G; 1378 T; 0 other; agtgaagatt gacccctcac caaagttctc ttgtgctaga gagacacggc tcaccctttt 60 tgtcttaggg aagtcgtttg caaaggtcac agcgtcgcct gactcgccgc tgccacccca 120 cctatacatc cccccccccc tttccatcgt agatatggtg ttctttgagc tcctgattgg 180 agctagcgtc aaagccgtaa aggatttcat ctcccactgc tacagccgcc taaagagtat 240 ttattactct ttgaaacggt ggctatggga gctacagggc aaattcaagg cccatgacgc 300 ctttgtcaac atgtgctatg ggcacatgtc tgacattgaa gatttcgaga tcccccttgc 360 tggtgagttc gaagtcaggg agggcgatct ggagatcgcg agagcaaagc tggcgctact 420 gattgcgcag cactccgaca tcggggtaac cgaggcgtac gggaaatacg ctagtcttac 480 tgggagcata cctgtaccag aggactataa accaagcgtc aaagaactag gttccgcggc 540 tgatagtgtg gaatcactaa tatccgagca cctgcaagcc gccagagaag cttccaaaat 600 ctacatcaaa gagaaaggtg taggttttat caattctttc aattcactca aagctcgatt 660 caagcatgta aaagagcaaa cacttctgtt caagcacaat gaggaagcag caagcaagat 720 caaacagcaa ctttttgctg tggaaaatat tgatgagctg cataacttta cagaagtcac 780 tcaagaggaa aatggcctaa agaaaaccat tatcaaggag gttaatggcg aggagcaata 840 cttcgaaatg cctattaaag ttgacgtccg cagaatcaaa gatactcctg ttgacaggga 900 gaaagccgct acttggatta gggcctacat caaggccaag aattcaagtt taactgccga 960 cgaactctca ttcgccacca tccccaaata cattgaaaat cttgcggcca aacatgactt 1020 gtctgctgaa agtcgcacgt accttaccaa gtgcgctttg ataatggtcc ccctgcctac 1080 aagcgaggaa atcgcaatca aaatgaccgt tcaatcccct gctgctcgtt ctagacgcga 1140 gcagatagaa attcttgacg ctaggggttt ttagatgggc tctgttccga gacaggtttt 1200 gaaagcccct tttctgaact tggcttacct gaaatctcgg tcacagatgg agcccgtatt 1260 cgtaaacagt ctagtaaaat tcatttccta tcgcaaacta gtttaggatt agttttccaa 1320 gcccccaatg ccagcctaca taatgcactc gtagccgttg aaaggagagt tttcaccgtt 1380 ggaaaaggaa atgaaataac actccccccg agaccagaac ttgacatttt cactgaatca 1440 atgaaatact tctcggacga aattgtaaat caagtggggt gttgtaaggt tttctctcct 1500 gagtttctcg ctttcagtta ctcttccgga aaaaggtcac aatatcttaa ggcaatagaa 1560 tcccttaaaa tgaaaccata tgaagaaaag gattctcatg taactgcctt cctcaagaaa 1620 gaaaaacatt ggatgaccaa gcccattgcc cccagactca tatgccccag aaccaagcga 1680 tacaatatta ttctgggaac ccacctcaag tttaacgaaa agaagatcat gcacgctatt 1740 gattgtgtgt ttggatcccc cacagtactc tcaggtttcg actcatttca acaaggaaag 1800 gtcatagcca gaaagtggcg aaaattttct aatcctgttg ctatcggagt cgatgccagt 1860 cgttttgatc agcacgtatc agaacaggct ctaatgtggg aacatagcat ctacaacgat 1920 atattcaatg atccgtttct caaaacggca ctgtcacatc aactgaacaa taatatattg 1980 atgtttgtag atgacaagat gttgaggttt aaagtcaagg gacaccgtat gtccggtgat 2040 ataaacacaa gcatggggaa taagctcatt atgtgtggca tgatgcatgc ttatttcaaa 2100 tcactaaatg tcgacgcaga actttgtaat aacggagacg attgtgtcat tatttgcgaa 2160 aggaaagacg aagccaaatt tgctggcatg tacgacttct ttctcaagta tggattcaat 2220 ctggttactg aacaccccgt ttatgaactt gaaaagctag agttctgcca atcgagacct 2280 gtttgtgtaa atggaaagta tagaatggta cgcagacctg attgtatatc aaaagacagc 2340 cataccttgt tgagtatgct cggccaagag gacgtcaagt cctatatgtc ggccgttgct 2400 cagtgtggtc tagtcttgaa ttctggcgtt ccgattctcg aaagcttcta cgagtgcctg 2460 taccgaagta gcggttataa gaaagtatct gaggagtaca tcaaaaacgt catatcctat 2520 ggtacggagg aaaggcttca gggtagacgt gcccgccaaa tcgagcctat taccctaggg 2580 acaagactca gttactggga aacatttgga gttgatccaa ggacacaaga aattgttgag 2640 aggtacttca acagtctaac gatcagtact cagctccaaa gagtgaaggt gacaactcca 2700 cacatgcaat caatccttct ctcaatccca gagaaaaatc cacccgctac acaatagatt 2760 ttcacttcct aactggctta ggaataggtt tcattttagc aattccctgt acattagctc 2820 tcacttactt catttacaat aaagtttcag acaccactag agaggtggtg aatgaattca 2880 gtaggccgta gaagagcaag caagaatgtc agagccagga gcaatagaac agttcggcca 2940 gtggttgtgg tccggaccaa tccaaatgga cgaagacgtc gagcccctcg acgcccaaga 3000 agaggaaggg caaatcctat acttggacca gcaggcaggt ctgaggtatt cgtattctca 3060 atcaacgata ttaaagccaa ttcctcaggg gtcatcaaat tcggccccga tctttcacaa 3120 tgtccagcgc tttcaagcgg aatacttaag tcctaccacc gttacaagat ctcaaatgtc 3180 aagatcgagt ttaagtcaca cgcgtcctcc actacagtcg gcgctatgtt tattgaactc 3240 gacaccgcgt gcacacaatc aaccttgggt agctacatta actcattcac cctctccaag 3300 tcaggaacca aaacgtttaa tgcccagcaa atcgctggca aagagttcag ggagacgtcg 3360 gtaaatcagt tttatttatt gttcaaagct aacggtgtta catctgacac tgcaggacaa 3420 ttcattatca ccttgcgggt ttcaaacatg actcccaaat aggtagactc ctcaacacca 3480 ggacccggcc caaagccaaa accagacccc acaccaaccc cagcccctga gcctaaaacc 3540 cccaagagat ttttcgagtt tatcggaaca ccttctgggg taatccaaac cagggaatca 3600 tcggacagca tttctgtgtc caagctggga gatcagacat tccaaaagat cgagaatgag 3660 aagtcaaatg acgtctttct ctcttcttac tggcaataca gtaacagtgt ttacgcccaa 3720 gctgcctttg taattccaat ttaccaaggt agctacagcg ttaacatttc atgtgaagga 3780 atgcaatctg tagatcacat aggaggggaa caagatggtt attggatagg tttgatagcc 3840 tactccaatt cgacagacga tgtctggggc gtcgggaatt accaaggatg cacaatcacg 3900 aaatacctcg tcaccaattc ttggagacca ggccatcaag acttaaaact caatgattgt 3960 gcgttcgaca aaggccaaat cgtagaaaga gacgcagtct tatcgttcca tgtagaagct 4020 gttggtgaca accccagttt ctacttacta gcaccaaaaa cgcaaaagac tgacaagtac 4080 aactatgttg tctcctacgg tggctacacc aacaagaaaa tggaatttgg aacaatagcc 4140 attacttgtg atgaatctga tgttgaggca ctccgcaatg caagacatgc aaactacccc 4200 atcaaggaaa accaccaaga attatatcat ggttcgggta ctttgctacc tgcctactcg 4260 cctgatagag tagaagtcta tcctgatatc actagctctg agcgaacggt tcaaccccgt 4320 cctagtgaag aacccaaatt tcgagatatc caaaatcagg aagaactttc aagtctattt 4380 gacttgtacg atctcgccac ctctgaaata cccgacgcaa gggaagatgt tttaccaacc 4440 aagcaagaaa tgagcaaaaa gccaattgac agcttgggca ctgaaattcc acgccctagg 4500 tctatgtccc cagagtatcc acgaccacgg tcacgctctc cggagtatcc ccgacctcgg 4560 tcacgatccc ctgaacccat aggaacctac catggccaaa acatctatga cgatgacgtc 4620 cccaaacaag tggctgagag gcttagagaa gccgctgaat tgccttctac tatgctctat 4680 aaccgaaaac ccaaaaacag aaattctagt tttctttccc gtttcattga acaaaataaa 4740 tcaccagatg ccaccgcccc ttccgaggct accacctcgc gaatgacccg agatcagctg 4800 aaagaataca ctcgtgttag gaatcagtat ggtctcaccg ctgctaagca atacaaagct 4860 tcacttggac agtgaaggtg aaagactgca ctctttcaca ccacctacca ctggcaaaag 4920 acggatcctg ggaaacaggc agtgcttagg cacgtaagct cggggatact agtcatatcc 4980 cgccgcatca cttttgtctg gccgatgggt gggctggagg tcattgctgt ctgtatgata 5040 gcaattgtgt tccttcaagc agtcggtacc attgtaaata tgtgcatctg tgtcggcgcc 5100 attgctgccg cataaaccaa aatgccattg cactgtgagc aacggcacac aaaaacaaag 5160 acgggagctc ttagctcagg aaagaggtca atcacctcat gacaggctgg tctaggtgga 5220 cttgaataac ccaccgcaag acaactggaa acccaccaga gaacaaataa ggtagcttgc 5280 ttctgagcta ttcactgccc cagtaacgtc tgggtaaaca aaacttcaca ccaccccgat 5340 gagaagaggg gagagtgtgc ggggttaggg atcccgtgat ataccctaga tcgtcgtggc 5400 ttgaggacgt taaaacgcaa cgaccttatt aagtcgttaa actgatagtc atctcccgag 5460 tgatgacccc tacccatgac ttataggaac gatacgaaac gttctactac ccgatgccgg 5520 aaccccctcg cggtcggcct ggatgagaaa ccaggattac atccggtagt tggctcgaat 5580 ggccatagca caagtcaggt actagggaaa aatactttgg aagcgagccc atgcgggcct 5640 ccgagttgcc agccggcaag acaactcgtg agtatcttca ctggtaacag tgaaggggtc 5700 cgacatattg acaggtggct cttgtgtcca ccttac 5736 //