ID KC559092; SV 1; linear; genomic RNA; STD; VRL; 4625 BP. XX AC KC559092; XX DT 13-JUN-2013 (Rel. 117, Created) DT 07-JUL-2013 (Rel. 117, Last updated, Version 2) XX DE Barley yellow dwarf virus Ker-III isolate K460 RNA-dependent RNA polymerase DE P1-P2 fusion (ORF1) and RNA-dependent RNA polymerase P1 (ORF1) genes, DE partial cds; and aphid transmission protein P5 (ORF3), coat protein P3 DE (ORF3), and movement protein P4 (ORF4) genes, complete cds. XX KW . XX OS Barley yellow dwarf virus kerIII OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4625 RX PUBMED; 23825645. RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.; RT "Distribution of Barley yellow dwarf virus-PAV in the Sub-Antarctic RT Kerguelen Islands and Characterization of Two New Luteovirus Species"; RL PLoS One 8(6):E67231-E67231(2013). XX RN [2] RP 1-4625 RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.; RT ; RL Submitted (31-JAN-2013) to the INSDC. RL UMR 1332 Biologie du Fruit et Pathologie, INRA, 71 Avenue Edouard RL Bourleaux, Villenave d'Ornon Cedex, CS 20032 33883, France XX DR MD5; 5554ea5fe49d0343470ef722c49883a8. XX CC ##Assembly-Data-START## CC Assembly Method :: Mega v. 5.02 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4625 FT /organism="Barley yellow dwarf virus kerIII" FT /host="Poa cookii" FT /isolate="K460" FT /mol_type="genomic RNA" FT /country="France:Kerguelen Islands Chionis" FT /collection_date="2009" FT /db_xref="taxon:2169988" FT gene <1..2568 FT /gene="ORF1" FT CDS join(<1..974,974..2568) FT /codon_start=2 FT /ribosomal_slippage FT /gene="ORF1" FT /product="RNA-dependent RNA polymerase P1-P2 fusion" FT /note="RdRp" FT /db_xref="GOA:R9UDT8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:R9UDT8" FT /protein_id="AGN54055.1" FT /translation="VKDFISHCYSRLRSIYYSLKRWLWEIQGKFKAHDAFVNMCYGHMS FT DIEDFEIPLAGEFEVREGEMEIARAKLALMIAQRSEIGVTEAYGKYASLAGCVHVPVDY FT KPSIKELEAAAESLEGHISEHLKAAKEASKIYIKEKGVGFISSFNSLKARVQHVKVQTL FT LEKENRSAAEKIKAQLFAKEDIAELREFTAVTKEKNGLTKVVTETDDEGKSYKKEEPVE FT VEVRRIKDTPEDREKAAAWIRAYIKIKNSSLSADELSMATIARYVDTLGERELLDMDSR FT IYLKKCAFVLVPLPTPEDIDIQMAINSPAARAKREQLAILRAEGFLEGLCTEVGFESPF FT SILGLPDISVTDGARLRKQSSCIHYLSQTSLGLAFQAPNASLHNALVAIERRVFTVGKG FT DEAVFPPRPEYSDIFTDSMSYFSQAVVNKTGYCKVFPEPLLALSYRAGKRSQYFKAIES FT LKIKPYEKKDSHVTAFLKKEKHWMTKPIAPRLICPRSKRYNVIVGTRLKFNEKRIMHAI FT DSVFESPTVLSGYDSFQQGKIIANKWRKFSNPVAIGVDASRFDQHVSEQALKWEHSIYN FT DLFNDPLLKEALEHQCDNNISMFVEDKMLRFRVRGHRMSGDINTSMGNKLIMCGMMHEY FT FKSLDVRAELCNNGDDCVIICERKDEKKFKGMYEHFLSYGFNMVTEEPVYKLTKLEFCQ FT SRPVQIYGKFQMVRRPDCIAKDSHTLLSMLGPEDVKSYMSAVAQCGLVLNSGVPILESF FT YKCLYRSSGYKKVSEEYIKNVISYGTEERLQGRRTYKETPITHMSRMSYWESFGVDPLN FT QKIVERYFDKLVVSAELQRVKVTTPHLQSILLSIPEKTPPSTQ" FT CDS <1..982 FT /codon_start=2 FT /gene="ORF1" FT /product="RNA-dependent RNA polymerase P1" FT /db_xref="GOA:R9UHG9" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:R9UHG9" FT /protein_id="AGN54054.1" FT /translation="VKDFISHCYSRLRSIYYSLKRWLWEIQGKFKAHDAFVNMCYGHMS FT DIEDFEIPLAGEFEVREGEMEIARAKLALMIAQRSEIGVTEAYGKYASLAGCVHVPVDY FT KPSIKELEAAAESLEGHISEHLKAAKEASKIYIKEKGVGFISSFNSLKARVQHVKVQTL FT LEKENRSAAEKIKAQLFAKEDIAELREFTAVTKEKNGLTKVVTETDDEGKSYKKEEPVE FT VEVRRIKDTPEDREKAAAWIRAYIKIKNSSLSADELSMATIARYVDTLGERELLDMDSR FT IYLKKCAFVLVPLPTPEDIDIQMAINSPAARAKREQLAILRAEGF" FT gene 2683..4566 FT /gene="ORF3" FT CDS 2683..4566 FT /codon_start=1 FT /transl_except=(pos:3283..3285,aa:OTHER) FT /gene="ORF3" FT /product="aphid transmission protein P5" FT /note="created by ribosomal read-through of the ORF3 stop FT codon" FT /db_xref="GOA:R9UH96" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:R9UH96" FT /protein_id="AGN54056.1" FT /translation="MNSAGRRRNNRNVRKSKPKPKPRAVRTVVMVQPNGAGPRRRNNRR FT SRGRGSNPLSGSAGRSEIFVFSVDGLKTNSSGILKFGPGLSQCPALSGGILKSYHRYKI FT ANVKIQYKSHASSTTTGAIYIELDTSCTQSALGSTINSFSINQSGSKTFNTEQIDGKDY FT RETTLNQFYLLYKGSESESNTAGQFIVTFRVMNTTPKXVDSSGPEPAPTPTPAPTPTPT FT PTPKPAPEPAKRFFEYTGVPIVTIQTRETSDTIILNKFENQTLQYLEDETASTRTIEAW FT WNGNNNVSAQAAFIFPVPEGSYSVNISCEGMQSVDHMGGTEDGYWIGLIAYNNSTTDNW FT GVGNYQGCTITKFLATNTWRPGHKDLKLNECSFTDGQIVERDAVMSFHVTATIKNASFY FT LMAPKTMKADKYNYVVSYGGYTNKRMEFGTITVTFDESGSEASRVKKHEGSMLRHNVVL FT FNNWTDPLPNLPPQEAEHTAVMTGDSSPENSDTEAEKAYNLATRFIPDANEDVLPSKED FT LSKKPMDSRGYTIPKPPARVEEPEVLDQYNYAPMYADDVRKAPSTSLYNTKPKNTGRTF FT LSRFVESSRTADAGQSEATTSRMTREQLKEYTRIRNTWGLTAAKEYKASLE" FT CDS 2683..3285 FT /codon_start=1 FT /gene="ORF3" FT /product="coat protein P3" FT /db_xref="GOA:R9UFV0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:R9UFV0" FT /protein_id="AGN54057.1" FT /translation="MNSAGRRRNNRNVRKSKPKPKPRAVRTVVMVQPNGAGPRRRNNRR FT SRGRGSNPLSGSAGRSEIFVFSVDGLKTNSSGILKFGPGLSQCPALSGGILKSYHRYKI FT ANVKIQYKSHASSTTTGAIYIELDTSCTQSALGSTINSFSINQSGSKTFNTEQIDGKDY FT RETTLNQFYLLYKGSESESNTAGQFIVTFRVMNTTPK" FT gene 2717..3187 FT /gene="ORF4" FT CDS 2717..3187 FT /codon_start=1 FT /gene="ORF4" FT /product="movement protein P4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R9UEL4" FT /protein_id="AGN54058.1" FT /translation="MSENQNPNQNLEQFGQWLWSSPMEQDPEDEITDAQEEEGQILYLD FT QQAGLRYSFSQSTALRPTQVGSSSSAPVYRNAQRFQVEYLSPTTVTRSQTSRFSISHTR FT PLLQPAQSILNSTLRAHNQPWVAQLTHSPSTNPAPKRSTRSKSMERITGKPR" XX SQ Sequence 4625 BP; 1439 A; 1124 C; 1052 G; 1010 T; 0 other; agtaaaggat ttcatttccc actgctacag tcgtctcagg agtatatatt actctttaaa 60 aagatggcta tgggaaatcc agggcaaatt taaggcccac gacgcttttg tcaacatgtg 120 ctatgggcac atgtctgaca tagaggactt cgaaatcccc cttgcagggg agttcgaagt 180 cagggagggc gagatggaaa tcgcccgggc caagctggcg ctgatgatag cgcagcgctc 240 cgaaatcgga gttaccgaag cgtacggaaa atacgctagt cttgccgggt gcgtccatgt 300 gcccgtagac tacaaaccca gcatcaaaga gctggaagcc gcagcagaaa gcctagaagg 360 gcacatatca gaacatctga aagctgcgaa ggaagcctcc aaaatctaca tcaaagaaaa 420 aggtgtaggc ttcatctcct ccttcaactc gctgaaagcc agagtgcagc acgtaaaagt 480 gcaaacactc ctcgagaagg agaaccgcag cgctgccgaa aagataaagg cacaactctt 540 tgctaaagag gacatcgcag agctgcgcga attcaccgcc gtcaccaagg agaaaaacgg 600 cctgaccaag gtcgtaacag agacggacga cgagggcaaa tcctacaaga aagaggagcc 660 cgtcgaggtg gaagtccggc gcatcaagga cacgccggag gacagagaga aggccgctgc 720 ttggatcagg gcctatatta aaattaagaa ttcatcactc tctgcagatg aattgtcgat 780 ggccacaatc gccaggtacg tcgacaccct gggtgagcgc gaactcctgg acatggactc 840 caggatttac ttgaagaaat gcgcttttgt cctggtgcca ttgccaacac cagaggacat 900 tgacatccag atggcaatca acagccctgc tgctagagcc aaacgcgagc agcttgcaat 960 tcttagggct gagggttttt agaagggctc tgtacagagg tcggttttga gagtccattt 1020 tccatcctgg gactccccga catctctgtc acagacggag cccgtttacg taaacagtct 1080 agttgcattc attaccttag tcagactagt ttaggattag cgtttcaggc gcctaacgcc 1140 tcattgcaca atgcattagt agcaatagaa aggagggtct tcaccgttgg gaaaggtgat 1200 gaagcagttt tccccccacg gccagaatat agcgatatat tcactgacag catgtcctat 1260 ttttcccaag ctgtcgtgaa caaaacggga tactgcaagg tttttccaga accattatta 1320 gcgctcagtt atcgcgcagg aaaaaggtcc cagtacttca aagccattga atccttgaaa 1380 atcaagccat acgaaaagaa ggattcacat gtgactgcat ttttgaagaa agaaaaacac 1440 tggatgacca agcccatagc tccaagactg atttgcccga gatccaagag atacaatgtc 1500 atagtaggga ctcggctcaa attcaatgag aaaaggatca tgcatgccat tgatagcgtg 1560 tttgagtctc ccaccgtcct atcaggatac gactctttcc aacagggaaa aattatagcc 1620 aacaaatggc gaaaattctc caaccctgtt gctattggcg ttgatgccag tagatttgac 1680 caacacgtat ccgagcaagc tttaaagtgg gagcatagca tatacaacga cttgttcaac 1740 gatcctctac tgaaggaggc gttagagcac caatgtgaca acaacataag catgttcgtt 1800 gaagataaga tgctaagatt cagagtcagg gggcacagaa tgtctggtga catcaacacc 1860 agtatgggaa acaagctcat catgtgcggc atgatgcatg aatatttcaa gagcttggat 1920 gtaagagcag aattgtgcaa caacggggat gactgtgtca ttatatgtga aaggaaggat 1980 gaaaagaaat tcaaaggcat gtatgaacac ttcctttctt atggcttcaa catggtcact 2040 gaagaacccg tgtacaagct aacgaagctt gaattctgcc agtcgcgacc agtccaaata 2100 tacggcaaat ttcaaatggt aagaaggccg gactgcatcg ccaaggatag ccacacactt 2160 ttgagtatgc taggcccaga ggatgtgaaa tcctacatgt cggccgttgc acagtgtgga 2220 cttgtcctca attccggggt acccattctg gaaagcttct acaagtgctt gtatcgaagc 2280 tctgggtaca agaaagtatc agaggagtac attaaaaacg tcatttcata tggaactgaa 2340 gagaggctac aaggtagacg tacctataaa gaaacgccta ttacccatat gagcaggatg 2400 agttactggg aatcattcgg agttgacccc ctaaaccaaa aaattgtcga gcggtacttt 2460 gacaaattgg tggtcagtgc tgaactccag agagtgaagg tgactactcc acatctgcaa 2520 tccatactcc tctccatccc ggagaaaacc cctccaagca cacaatagat tttcattttc 2580 ttacaggctt aggaataggt ttcattttag ctatcccttg tactttagct ttagtctatt 2640 tcatttacaa taaagtttca gacaccaccc gcgaggtcgt gaatgaattc agcaggccgt 2700 aggagaaaca atcggaatgt cagaaaatca aaacccaaac caaaacctcg agcagttcgg 2760 acagtggtta tggtccagcc caatggagca ggacccagaa gacgaaataa ccgacgctca 2820 agaggaagag ggtcaaatcc tttatctgga tcagcaggcc ggtctgagat attcgttttc 2880 tcagtcgacg gccttaagac caactcaagt gggatcctca agttcggccc cggtctatcg 2940 caatgcccag cgctttcagg tggaatactt aagtcctacc accgttacaa gatcgcaaac 3000 gtcaagattc agtataagtc acacgcgtcc tctactacaa ccggcgcaat ctatattgaa 3060 ctcgacactt cgtgcacaca atcagccctg ggtagcacaa ttaactcatt ctccatcaac 3120 caatccggct ccaaaacgtt caacacggag caaatcgatg gaaaggatta ccgggaaacc 3180 acgctgaacc agttctacct cctttacaag ggcagtgaat cagaatcaaa cactgcaggg 3240 cagttcatcg tcactttcag agtgatgaat acgaccccca aataggtaga ctcctcagga 3300 ccagaaccag ctccaactcc gactccagcc ccaactccaa caccaactcc aaccccaaaa 3360 cctgcccccg aacctgccaa aagattcttc gaatacacag gtgttccgat cgtgacaatt 3420 cagaccagag agacatcgga cacgataatc ttgaacaaat tcgagaatca aacgcttcaa 3480 tacttagagg atgaaacagc ctcaaccaga acaattgaag cctggtggaa cggaaacaat 3540 aacgtgtcag ctcaggctgc atttattttt ccggtgccag aaggcagtta ctctgtcaac 3600 atttcatgcg aaggcatgca gtcggttgac catatgggag gcacagaaga tggatattgg 3660 ataggcctca ttgcctacaa caattccaca acagacaact ggggagttgg gaattatcaa 3720 ggctgtacca tcacaaagtt cctggcaaca aatacgtgga ggccaggaca caaagatctt 3780 aaattgaatg aatgttcatt cacagatggt caaatagtcg agagagatgc cgttatgtct 3840 tttcacgtaa cggctactat caaaaatgcc tcattctacc tcatggctcc taagaccatg 3900 aaggctgaca agtacaatta tgttgtatcc tacggagggt acaccaacaa aagaatggaa 3960 tttggcacaa ttaccgtcac atttgacgag tctggttctg aggcatctcg ggttaagaag 4020 catgaaggct ccatgcttag acacaatgta gtactcttta ataactggac ggatcccctt 4080 ccgaatctac cgccacaaga agccgaacac actgcggtca tgacagggga ttcatcacca 4140 gagaattctg acaccgaagc tgagaaagca tataatctgg caactaggtt catacctgat 4200 gctaatgagg acgtactacc ctcaaaagaa gatctcagca agaaaccaat ggacagtcgg 4260 ggctatacaa tacctaagcc cccagcgaga gtcgaggaac ctgaagtact cgaccaatac 4320 aactacgcac caatgtacgc tgatgacgtc cgcaaagctc ctagcacctc cttatacaac 4380 acaaaaccca aaaacacagg tagaactttt ctaagtagat ttgtagagtc tagtagaaca 4440 gctgacgcag gccagtctga agccaccaca tccaggatga ctagggaaca actcaaagag 4500 tacacccgca ttagaaacac ctggggcttg actgctgcca aagaatacaa ggcttcctta 4560 gagtgaaggt aatcaccctc cacacttctc gccactgcca gataacggat cctgggaaac 4620 aggca 4625 //