ID KC545812; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC KC545812; XX DT 13-MAY-2013 (Rel. 116, Created) DT 13-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate India:Delhi:Cucumis:2012 segment DE DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Roy A., Bag M.K., Prasad T.V., Ranjan P., Gangopadhyay K.K.; RT "Detection and characterization of Tomato leaf curl New Delhi virus and RT betasatellite complex from cucumber germplasm in India"; RL Unpublished. XX RN [2] RP 1-2739 RA Roy A., Bag M.K., Prasad T.V., Ranjan P., Gangopadhyay K.K.; RT ; RL Submitted (30-JAN-2013) to the INSDC. RL Germplasm Evaluation Division, National Bureau of Plant Genetic Resources, RL Pusa, New Delhi, Delhi 110012, India XX DR MD5; 01e4af1ac89a3b418e258307ad4d7a7a. XX CC GenBank Accession Numbers KC545812, KC545813 represent sequences CC from the 2 segments of Tomato leaf curl New Delhi virus. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA-A" FT /host="Cucumis sativus" FT /isolate="India:Delhi:Cucumis:2012" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /isolation_source="infected leaf" FT /collection_date="20-Aug-2012" FT /clone="Cucumber1" FT /db_xref="taxon:223347" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:R4MY18" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:R4MY18" FT /protein_id="AGL33683.1" FT /translation="MCDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:R4MPJ0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:R4MPJ0" FT /protein_id="AGL33684.1" FT /translation="MAKRPADIIISTPGSKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:R4N1U5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R4N1U5" FT /protein_id="AGL33687.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTVLRPQIGIFLRVFKTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:R4N027" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R4N027" FT /protein_id="AGL33686.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCTYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFEARQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:R4MRJ7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R4MRJ7" FT /protein_id="AGL33685.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NLISNLDRIFQTRSEVYVSPFSISSFDRVPPELVDWASVNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="pathogenicity determinant" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A7U6D0" FT /protein_id="AGL33688.1" FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQR FT QMSKHTSTKTETF" XX SQ Sequence 2739 BP; 740 A; 593 C; 614 G; 792 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cttatttagt gcgtggggac caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgtgatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag atagagaaga actattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccgag caaagaatta tggcgaagcg accagcagat 300 atcatcattt caacgcccgg atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagga gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtctttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gcgttagtga tgttactcga ggaactggac tcacacatcg cgtggggaag 600 cgattttgtg tgaaatctgt ctatgtgctg gggaagattt ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttagttc gtgaccgtcg tcctacagga 720 tccccccaag attttgggga tgtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatacaga aaatgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcca gttttatatc atacgaagtc 1080 catacatcaa ttgttcgctc caatacatta tccaatacat gataaactgc tcttattaca 1140 ttataaattc ctatgacacc taacatatcc aggtacctaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag accgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat cttgatgatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgcttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatataatat gtacacccac acggaagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattctt ctcttcgtcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttg gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaagcatc gagcccacat tgttttgccc gttctactat 1920 ccccttcaat gactatgctt atgggcctaa aagggcgcgc agcggcacac acaacattga 1980 cactggccca atcgacaagt tctggaggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacgtaaac ctcagaacga gtttggaaaa tgcgatccag attgctaatt aaattatgaa 2100 actgcagaac ataatccttt ggggctaatt cctttaatac tttcaatgca tcttccttat 2160 tccctgtgtt aatcgccttc gcatatgcat cgttggccgt ctgctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatg 2280 ctttgacatc tgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgcagctc tctacagatc ttgatgaatt 2460 tcttcgcagt tggggtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt tcgcatctat tctgaaacga cgtggcggag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaacttt ctctatgtaa ttggcgtctg 2640 gcgtcccata tataggtagg acgctaaatg gcagaattgt aattttgaaa agaaaattac 2700 tttaattcaa aatcctcata gcggccattc gttaatatt 2739 //