ID KC527816; SV 1; linear; genomic RNA; STD; VRL; 3362 BP. XX AC KC527816; XX DT 13-JUN-2013 (Rel. 117, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 3) XX DE Cucumber mosaic virus isolate RP47 segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3362 RX DOI; 10.1094/PHYTO-10-13-0275-R. RX PUBMED; 25116642. RA Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.; RT "Molecular genetic analysis of cucumber mosaic virus populations infecting RT pepper suggests unique patterns of evolution in Korea"; RL Phytopathology 104(9):993-1000(2014). XX RN [2] RP 1-3362 RA Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.; RT ; RL Submitted (20-JAN-2013) to the INSDC. RL Crop Life Safety, Crop Protection Division, National Academy of RL Agricultural Science, 150 Suin-Ro, Gwonseon-Gu, Suwon, Gyeonggi 441-707, RL Republic of Korea XX DR MD5; 7457120e0a848fad4a9ef6e0f3276cc2. XX FH Key Location/Qualifiers FH FT source 1..3362 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Capsicum annuum L. (pepper)" FT /isolate="RP47" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2007" FT /db_xref="taxon:12305" FT CDS 95..3076 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:R9ULI8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:R9ULI8" FT /protein_id="AGN56154.1" FT /translation="MATSSFSINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GTIPELNCQWRKIRSAFSEAEDVTSLSGKIDSSGFTGVRKFKTLVAFDFINESTMSYVH FT DWKNIKSFLTDQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVKWKTVRVLMSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHTLFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVDEGSDSPEEPSSTPDDTADVCGKEQEISELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELFIVNRECVICNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKITPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAITTVTLVDLDPSRFYITMTQADKASLISRAKEMNLPKDFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" XX SQ Sequence 3362 BP; 860 A; 746 C; 815 G; 941 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttc tctaatcttt tcttagtaat tcctatggcg acgtcctcgt tcagcatcaa 120 tgaattggta gcctcccacg gcgataaagg actactcgcg accgccctcg ttgataaaac 180 agctcatgag cagctcgagg agcaattaca acatcaacgt aggggccgta aggtctacat 240 tcggaatgtt ctgagtgtaa aggattccga agtcatccgg aatcggtatg gaggaaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg ccctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcatca ggtctgcggc aggacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacacaacg tacactgctg 480 ttccccttgt ttgggtatcc gcgataagat gcgccacgcg gaacgtttaa tgaacatgcg 540 caagatcatc ttgaacgatc cacaacagtt cgatggtcga cagccggatt tttgcactca 600 tccagctgct gattgcaaag tacaagccca ctttgctata tctattcatg gaggttatga 660 tatgggcttt agaggattat gtgaggcgat gaacgctcac ggaaccacca ttttgaaggg 720 aacgatgatg ttcgatggtg cgatgatgtt tgacgaccaa ggcacgatac ccgaacttaa 780 ttgccagtgg agaaaaatta ggagcgcatt ctctgaagct gaagacgtca catctttgtc 840 tggtaaaatt gattcctctg gattcaccgg tgtgcgtaag ttcaagactt tggttgcttt 900 tgattttatc aatgagtcta ccatgtcgta cgttcatgat tggaagaata taaaatcctt 960 tctaacggac cagacttact cgtataaagg gatgacttat ggcattgaac gatgtgtcat 1020 taatgcgggt atcatgacgt ataagataat cggtgtgcct gggatgtgtc cgcccgaact 1080 cattcgacat tgtatttggt tcccctctat taaagattat gttggtttaa agattcccgc 1140 gtcgcaggac ttggttaagt ggaaaacagt gcgtgtttta atgtcaacat tacgtgaaac 1200 ggaagagatt gctatgaggt gttacaacga taagaaagcg tggatggaac aattcaaggt 1260 tatcctgggt gttttgtctg cgaaatcatc taccattgtt attaatggta tgtccatgca 1320 atctggtgag cgtatagata ttaacgatta ccattatatt ggtttcgcta ttcttctgca 1380 cacgaaaatg aaatatgaac aactgggaaa aatgtatgat atgtggaatg cttcgagcat 1440 atcgaagtgg tttgcagcgt tgactcgacc gctgcgtgtg tttttctcca gtgttgttca 1500 cacactgttc ccgactttga gaccccgcga ggaaaaagaa ttcctgatca agctctccac 1560 ctttgtgact tttaatgaag agtgctcatt tgacggtgga gaggaatggg acgtgatatc 1620 atctgctgca tacgttgcta cacaggctgt tactgatggg aaagttttgg ctgcgcagaa 1680 agccgagaag ctcgctgaaa agcttgcaca acccgtggat gagggatcag acagccctga 1740 ggagccatct tcaactcctg atgatactgc cgatgtttgt ggaaaggagc aagaaatttc 1800 ggaacttgac tcattgtcgg ctcagacacg ttcccccatc actagagttg ctgaaagggc 1860 tactgccatg ctggagtacg ccgcttatga gaaacagcta cacgacacca cagtgtccaa 1920 tttgaaacgt atttggaata tggcgggcgg tgatgacaag agaaactccc tcgagggtaa 1980 tttgaagttt gttttcgaca cgtatttcac tgtcgacccc atggtgaata ttcacttttc 2040 gacaggtcgg tggatgcgtc ctgtgcctga gggaattgtt tactctgttg gttataatga 2100 acgcggttta ggtccgaagt ctgatggaga gcttttcatt gtcaatagag aatgcgtgat 2160 atgtaatagc gagtccttat ctgctgtcac acgttctctc caagctccaa ctggaaccat 2220 cagtcaagtc gacggagtcg ccggttgtgg gaaaactacg gcaattaaat ccatttttga 2280 gccgtccact gacatgatcg ttaccgcgaa caagaagtcc gcccaagacg tgcgtatggc 2340 acttttcaaa tcgtcagact ctaaggaagc atgcaccttt gttcgaacag ccgattccgt 2400 cctacttaat gaatgtccga ctgtgagtag ggttttggtt gatgaggtcg tattgctaca 2460 ttttggtcaa ctgtgtgctg tcatgtctaa actgaaagct gtgcgagcta tatgcttcgg 2520 ggattcggag cagattgctt tttcttctcg agatgcttcg ttcgacatgc gtttctctaa 2580 gatcactcct gatgagacca gtgatgcgga cactacattc cgtagtccac aagacgtcgt 2640 gccgcttgtg cgtttgatgg ctacgaaggc cctcccgaaa ggaacccatt caaaatacac 2700 gaaatgggtt tctcaatcta aagtgaagag atctgtcaca tctcgcgcta tcactactgt 2760 gacattggtc gacttggatc catccaggtt ttacattaca atgactcagg ctgataaggc 2820 ttcactgatt tcaagggcga aagagatgaa cttaccaaag gatttctgga atgagaggat 2880 taaaaccgta catgaatctc aaggtatttc tgaagatcat gtcaccttgg taagattaaa 2940 gagcacaaaa tgtgacctat ttaaacagtt ttcatactgt cttgttgctt taactagaca 3000 caaggtcaca ttccgctacg agtactgcgg tgttttgaat ggtgatttaa tcgccgaatg 3060 tgttgctcgt gcttagcggc atccctcctt cgggcgggat ctgagttggc ggtaatctac 3120 aaaccgtctg aagtcactaa acgattgttt cggtgaacgg gttgtccatc cagcttacgg 3180 ctaaaatggt cagtcgtgga gaaaatccac gccagcagac ttacaagtct ctgaggcgcc 3240 tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtacct ctagcacaat 3300 gtgctagtgt cagggtacgg gtgccccccc cacttctgtg gggggcctcc taaaggagac 3360 ca 3362 //