ID KC527805; SV 1; linear; genomic RNA; STD; VRL; 3360 BP. XX AC KC527805; XX DT 13-JUN-2013 (Rel. 117, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 3) XX DE Cucumber mosaic virus isolate RP33 segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3360 RX DOI; 10.1094/PHYTO-10-13-0275-R. RX PUBMED; 25116642. RA Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.; RT "Molecular genetic analysis of cucumber mosaic virus populations infecting RT pepper suggests unique patterns of evolution in Korea"; RL Phytopathology 104(9):993-1000(2014). XX RN [2] RP 1-3360 RA Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.; RT ; RL Submitted (20-JAN-2013) to the INSDC. RL Crop Life Safety, Crop Protection Division, National Academy of RL Agricultural Science, 150 Suin-Ro, Gwonseon-Gu, Suwon, Gyeonggi 441-707, RL Republic of Korea XX DR MD5; c70dd2c61859b2c15f98278bf525ad74. XX FH Key Location/Qualifiers FH FT source 1..3360 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Capsicum annuum L. (pepper)" FT /isolate="RP33" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2007" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:R9UL32" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:R9UL32" FT /protein_id="AGN56143.1" FT /translation="MATSSFNINELVASHGDKGLLANALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GTIPELNCQWRKIRSAFSEAEDVTPLSGKIDSSGFTGVRKFKTLVAFDFINESTMSYVH FT DWRNIKSFLTDQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYIGLKIPASQDLVKWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAFVATQ FT AVTDGKILAAQKAEKLAEKLAQPVIEVSDSPEASSPTLDDTADVCGREQEVSELDSLSV FT QTRSPITRIAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKKNSLEGNLKFVFD FT TYFTVDPMVNVHFSTGRWMRPVPEGITYSVGYNERGLGPKSDGELYIVNSECVISNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSRIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDESRFYVTMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYCGTLNGDLIAEC FT VARV" XX SQ Sequence 3360 BP; 831 A; 736 C; 839 G; 954 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaatta ccctttgaaa 60 acctctcttt tctaatcttt tctttgtaaa ttcctatggc gacgtcctcg ttcaacatta 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaacgccctc gttgataaga 180 cagctcatga gcagcttgag gagcaattac agcatcaacg cagaggccgt aaggtctaca 240 ttcggaacgt tctgagtgta aaggattctg aggtcatccg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caggaccttg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgct 480 gttccccttg tttgggtatt cgcgataaaa tgcgccacgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttctgcactc 600 atcccgctgc tgattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggatta tgtgaagcaa tgaatgctca cggaaccact attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgacca aggtacaata cccgagctta 780 attgtcagtg gaggaagatt aggagtgctt tctccgaagc tgaagacgtc acacccttgt 840 ctggtaaaat tgattcttca ggattcaccg gcgtgcgtaa gttcaagact ttggtagctt 900 ttgattttat caacgagtct accatgtctt atgttcatga ttggaggaat ataaaatcgt 960 ttctgacgga ccagacgtac tcgtataaag ggatgactta tggcattgaa cgttgtgtca 1020 ttaatgcggg tattatgacg tataagatta tcggtgtacc tgggatgtgc ccacctgaac 1080 tcattcgaca ttgtatttgg ttcccctcta ttaaggacta tattggtctc aagattcccg 1140 cgtcgcagga cttggttaag tggaaaacag tgcgcatttt aacgtcaaca ttgcgtgaga 1200 ctgaagagat tgccatgagg tgttataacg ataagaaggc gtggatggag cagtttaagg 1260 ttatcttagg tgttctatcc gctaaatcat ccaccattgt tattaatggt atgtctatgc 1320 agtccggcga acgaatcgat atcaacgatt atcattatat tggattcgcc attcttcttc 1380 acacaaaaat gaagtatgaa cagttaggga agatgtatga tatgtggaat gcttcgagta 1440 tctcgaagtg gttcgcagcg ttgactcgtc cgctgcgtgt gttcttctct agtgttgttc 1500 acgcgctgtt cccgactttg agaccccgcg aggagaaaga attcctgatt aagctctcca 1560 cctttgtgac tttcaacgaa gagtgctcgt ttgatggtgg agaggagtgg gacgtgatat 1620 catctgctgc attcgttgcc acgcaggctg ttaccgatgg gaagattttg gccgcgcaga 1680 aggccgagaa gctcgctgaa aagcttgcgc aacccgtgat tgaggtatcg gacagtcctg 1740 aagcgtcatc tccaacgctt gatgatactg ctgatgtttg tggaagggag caagaagttt 1800 cggagcttga ttccctgtca gttcagacac gttcccccat cactagaatt gctgaaaggg 1860 ctactgctat gttagagtat gccgcttatg agaaacagtt gcacgatacc acggtgtcca 1920 acctgaaacg catttggaat atggcgggtg gtgatgacaa gaaaaattcc ctcgaaggca 1980 atttgaagtt tgtctttgac acgtatttta ccgttgatcc tatggtgaat gtccattttt 2040 ccacgggtcg gtggatgcgt cctgtgcctg aggggattac ttattctgtc ggttataacg 2100 aacgcggtct aggtccgaaa tctgatgggg agctttacat tgtcaatagt gagtgtgtga 2160 tcagtaacag cgagtctttg tctgctgtca cgcgctcatt acaagctcct accggcacca 2220 ttagtcaagt tgatggggtc gctgggtgcg ggaaaaccac ggcaattaaa tcaatttttg 2280 agccgtccac ggatatgatc gttacggcta acaagaaatc cgcccaagat gtgcgtatgg 2340 cacttttcaa atcgtcggac tccaaagaag cttgcacctt tgtccgaaca gccgactctg 2400 ttttgcttaa tgaatgtccg accgtgagta gagttttggt tgacgaggtt gtgttgctgc 2460 actttggtca attatgtgcc gtcatgtcca aattgaaggc tgtgagagcc atatgtttcg 2520 gggattcaga gcaaattgct ttttcctctc gagatgcctc gtttgacatg cgtttctcta 2580 ggatcattcc tgacgaaact agtgatgcgg acactacatt ccgtagtcca caagatgttg 2640 tgcctcttgt gcgtttaatg gctacgaagg ccctcccgaa aggaacccgc tcaaagtata 2700 cgaagtgggt ttctcaatct aaagtgaaga gatctgtcac atctcgggct attgcaagtg 2760 tgacgttggt tgatttagat gagtctagat tttacgtcac gatgacacaa gccgataaag 2820 cttcactgat ttcaagggcg aaagagatga acttaccgaa gactttctgg aatgaaagga 2880 tcaaaaccgt gcatgagtct caaggtattt ccgaggatca cgttactttg gtaagattaa 2940 agagcacaaa gtgtgacctg tttaagaaat tttcttactg tcttgtcgct ttaactaggc 3000 ataaggtcac tttccgctac gagtactgtg gtacactaaa cggcgattta atcgccgagt 3060 gtgttgctcg tgtttagcgg tgttcctcct tcgggcggac ctgagttggc ggtaatctac 3120 aaaccgtctg aagtcactaa acgctctgcg gtgaacgggt tgtccatcca gcttacggct 3180 aaaatggtca gtcgtggaga aaatccacgc cagcagactt acaagtctct gaggcgcctt 3240 tgaaaccatc tcctaggttt cttcggaagg acttcggtcc gtgtacctct agcacaatgt 3300 gctagtgtca gggtacgggt gcccccccca cttctgtggg gggcctccta aaggagacca 3360 //