ID   KC527730; SV 1; linear; genomic RNA; STD; VRL; 2217 BP.
XX
AC   KC527730;
XX
DT   13-JUN-2013 (Rel. 117, Created)
DT   23-JUN-2016 (Rel. 129, Last updated, Version 3)
XX
DE   Cucumber mosaic virus isolate RP1 segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2217
RX   DOI; 10.1094/PHYTO-10-13-0275-R.
RX   PUBMED; 25116642.
RA   Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.;
RT   "Molecular genetic analysis of cucumber mosaic virus populations infecting
RT   pepper suggests unique patterns of evolution in Korea";
RL   Phytopathology 104(9):993-1000(2014).
XX
RN   [2]
RP   1-2217
RA   Kim M.K., Seo J.K., Kwak H.R., Kim J.S., Kim K.H., Cha B.J., Choi H.S.;
RT   ;
RL   Submitted (20-JAN-2013) to the INSDC.
RL   Crop Life Safety, Crop Protection Division, National Academy of
RL   Agricultural Science, 150 Suin-Ro, Gwonseon-Gu, Suwon, Gyeonggi 441-707,
RL   Republic of Korea
XX
DR   MD5; 8d8c9713e8a75cd4c38a0022bf1fc0b5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2217
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Capsicum annuum L. (pepper)"
FT                   /isolate="RP1"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:12305"
FT   CDS             126..965
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="3a; MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:R9UKU3"
FT                   /protein_id="AGN56023.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPEAIKKMAAECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIVSFFKSGYDAGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDKQCVTLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYVGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIEASQYVLTDSKINQNARSESEELNVESPPAAIGSSSASRFETFRPQVVNGL"
FT   CDS             1261..1917
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q9IW09"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IW09"
FT                   /protein_id="AGN56024.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT                   LATGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDKGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVTAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2217 BP; 523 A; 523 C; 527 G; 644 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgcg tcgtgtcgag tcgtgttgtc        60
     cgcacatttg agtcgtgctg tccgcacccc cccttttctt ttcagtgtgt tagaataccc       120
     gaggcatggc tttccaaggt accagcagga ctttaactca acagtcctca gcggctacgt       180
     ctgacgaact tcaaaagata ttatttagcc ctgaagccat taagaaaatg gctgctgagt       240
     gtgacctagg ccggcatcat tggatgcgcg ctgataatgc tatttcagtc cggcccctcg       300
     ttcccgaagt aacccacggt cgcattgttt ctttctttaa gtctgggtat gatgctggtg       360
     aattgtgctc taaaggatat atgagcgtcc ctcaagtgtt gtgtgctgtt actcgaacag       420
     tttctaccga tgctgaaggg tccttgagaa tttacctagc tgacttaggc gacaaggaac       480
     tatctcccat agataagcaa tgtgtcacat tacataacca tgatctcccc gctttagtgt       540
     ctttccaacc gacgtatgat tgtcctatgg agacagttgg gaatcggaag cggtgttttg       600
     ctgtcgttat cgaaagacat ggttacgttg ggtataccgg caccacagct agcgtgtgta       660
     gtaattggca agcacggttt tcttctaaga ataacaacta cactcatatc gcagctggga       720
     agactctagt actgccattc aatagattag ctgagcaaac gaaaccgtca gccgtcgctc       780
     gcctattgaa gtcgcaattg aataacatag aagcttcgca atacgttttg acggattcga       840
     agatcaatca gaatgcgcgc agtgagtccg aggaattaaa tgttgagagc cctcccgccg       900
     caatcgggag ttcttccgcg tcccgcttcg aaaccttcag accgcaggtg gttaacggtc       960
     tttagatttt cgtcgcgtat tagtatataa gtatgtgtga gtctgtacat aatactatat      1020
     ctatagtgtc ctgtgtgagt tgatacagta gacaactgtg acgcgatgtc gtgttgagaa      1080
     gagagcacat ctggttctag taagccacat cattagtttt gaggttcaat tcctcttact      1140
     ccctgttgtg ccccttactt tttcatggat gcttctccac gaaattgcgt ttcgtctact      1200
     agatcaagga gtgtttgtgt tgtgattttc tctttgtgtt gtagatattt gagtcgagtt      1260
     atggacaaat ctgaatcaac cagtgctggt cgtaaccgtc ggcgtcgtcc gcgtcgtggt      1320
     tcccgctccg cttcctcctc cgcggatgct aattttagag tcttgtcgca gcaactttcg      1380
     cgacttaaca agacattagc aactggtcgt ccaactatta accacccaac ctttgtgggt      1440
     agtgagcgtt gtaaacctgg atacacgttc acctcgatta ccctgaagcc accaaagata      1500
     gacaaaggat cttactatgg caaaaggttg ttacttcctg attcagtcac agagttcgat      1560
     aagaagcttg tttcgcgcat tcaaattcga gttaatcctt tgccgaaatt tgattctacc      1620
     gtgtgggtga cagtccgcaa agttcctgcc tcatcggact tatccgttac cgccatctct      1680
     gctatgttcg cggacggagc ctcaccggta ctggtttatc agtatgcagc atccggagtc      1740
     caagccaaca ataaattgtt gtatgatctt tcggcgatgc gcgctgatat tggtgacatg      1800
     agaaagtacg ccgtgctcgt gtattcaaaa gacgatgcgc tcgagacgga cgaattggta      1860
     cttcatgtcg acattgagca ccaacgcatt cccacatctg gggtgctccc agtttgaacc      1920
     tgtgttttcc agaaccctcc ctccgatttc tgtggcggga gctgagttgg tagtgttgct      1980
     ataaactacc tgaagtcact aaacgctatg cggtgaacgg gttgtccatc cagcttacgg      2040
     ctaaaatggt cagtcgtgga gaaatccacg ccagcagact tacaagtctc tgaggtgcct      2100
     ttgaaaccat ctcctaggtt tcttcggaag gacttcggtc cgtgtacttc tagcacaaga      2160
     tgctagttta gagtacgggc atcccccatt tttaatgggg tctctcaaag gagacca         2217
//