ID KC513823; SV 1; circular; genomic DNA; STD; VRL; 2844 BP. XX AC KC513823; XX DT 30-APR-2013 (Rel. 116, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 33) XX DE Jatropha mosaic Lucknow virus clone AS-JI-2 segment DNA-A, complete DE sequence. XX KW . XX OS Jatropha mosaic Lucknow virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2844 RX DOI; 10.1016/j.virusres.2015.02.015. RX PUBMED; 25720372. RA Srivastava A., Kumar S., Jaidi M., Raj S.K.; RT "Characterization of a novel begomovirus associated with yellow mosaic RT disease of three ornamental species of Jatropha grown in India"; RL Virus Res. 201:41-49(2015). XX RN [2] RP 1-2844 RA Raj S.K., Srivastava A., Kumar A.; RT ; RL Submitted (19-JAN-2013) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U.P. 226001, India XX RN [3] RC Amino acid sequence updated by submitter RP 1-2844 RA Raj S.K., Srivastava A., Kumar A.; RT ; RL Submitted (22-AUG-2014) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U.P. 226001, India XX DR MD5; ff5226c6b4b2c9d69899e907085a355f. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2844 FT /organism="Jatropha mosaic Lucknow virus" FT /segment="DNA-A" FT /host="Jatropha integerrima" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="S.K. Raj" FT /clone="AS-JI-2" FT /db_xref="taxon:1538465" FT gene 175..528 FT /gene="AV2" FT CDS 175..528 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:M9Z5F3" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:M9Z5F3" FT /protein_id="AGK29968.1" FT /translation="MWDPLTNEFPETLHGFRCMLAVKYIQALLSSYAPDTVGYEYLRDL FT ISVLRCRDYAKASVRYGRIVAAKNNTPETELRESLPSHCQCRHCPRHGIQKEGVDVATG FT EQKTCDIQEKESA" FT gene complement(319..615) FT /gene="C5" FT CDS complement(319..615) FT /codon_start=1 FT /gene="C5" FT /product="C5 protein" FT /db_xref="GOA:A0A077CWW8" FT /db_xref="UniProtKB/TrEMBL:A0A077CWW8" FT /protein_id="AIL24136.1" FT /translation="MHRTPPVCVTSCLFSNDCTLHGPSHPRGTSGALLLLYIAGFLFAG FT RHIHALLLYPMSGAVTALAMRREGLPKFSFRRVILSGDDPTISNRRFGIVAAA" FT gene 335..1072 FT /gene="AV1" FT CDS 335..1072 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:M9Z360" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M9Z360" FT /protein_id="AGK29969.1" FT /translation="MPKRLFDMVGSSPLRITRRKLNFGSPSRLIASAVTAPDMGYKRRA FT WMWRPANRKPAIYRRRRAPDVPRGCEGPCKVQSFEKRHDVTHTGGVLCISDVTRGNGIT FT HRVGKRFCVKSVYILGKIWMDENIKTKNHTNSVIFWLVRDRRPFGTPMDLGQVFNMYDN FT EPSTATVKNDLRDRYQVLHKWHASVTGGVYASKEQAIIRSSTESIIMWSIITRKPRNTR FT IILRMRYYCIWHVLMHQIQCMQH" FT gene complement(1107..1511) FT /gene="AC3" FT CDS complement(1107..1511) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:M9ZA35" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M9ZA35" FT /protein_id="AGK29966.1" FT /translation="MDSRTGEPITAARLNNGVFIWTVPNPLYFRLINHMSRPFFLDQDI FT IHLRIQFNHNLRQALQIHKCFLSFKVWTRSRIQTGIFLRVFKTQVIRYLDRLGVISINL FT VIRAVDHVLYNVLHHTMQVEQSNEIMFRLY" FT gene complement(1252..1656) FT /gene="AC2" FT CDS complement(1252..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:M9Z6H9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M9Z6H9" FT /protein_id="AGK29967.1" FT /translation="MLSCSTATVPLQLLSRNARGELRSGGDKAEEDRLEVRLFIFSVIN FT CANHGFTHRGTHHCSSFEQWRLYLDGPKSSVLPAHQSHEPALLSGPGHHTPPNTIQPQS FT QASTTDTQVLPELQSLDSFTDSDWDILTSL" FT gene complement(1590..2699) FT /gene="AC1" FT CDS complement(1590..2699) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:M9ZBY1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M9ZBY1" FT /protein_id="AGK29970.1" FT /translation="MPRVSAFSVSAKNIFLTYPKCPLSKETVLDLLRNISCPSDKLFIR FT VAQEKHEDGSLHIHALIQFKGKARFRNARHFDLTHPHSSSQFHPNIQGAKSSSDVKSYI FT EKDGDYIDWGSFQIDGRSARGGQQTVNDAAAEALNSGSAEAALAIIREKMPKDYIFQYH FT NLKSNLERIFTPPRVDYVSPYPLSSFDRVPEELESWASENVISTAARPFRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPQSSYKEYLDEDKNKALKNWAVKNVLFVFISEPL FT YSSSASQECFRVRQRQSPSSSFQETPEAN" XX SQ Sequence 2844 BP; 818 A; 613 C; 678 G; 735 T; 0 other; accggatggc cgcgattttt ttaatgtgga ccccatagca gacaaacaga caaagaaaag 60 aaaagggaac ccactacaaa gagaaaagaa ggcatccaat ggagagcgcg cctggaattc 120 aaactaacgt gccgcgcgct ataaaacttg ctggcgaagg agtagagccg caacatgtgg 180 gatccattaa ccaacgagtt tcccgaaacc ctgcacgggt ttcgctgtat gcttgcagtc 240 aaatatatac aagctctact ctcttcgtac gctcctgata cggtcggata cgagtacctt 300 cgtgatctga tcagcgtatt acgctgccgc gactatgcca aagcgtctgt tcgatatggt 360 cggatcgtcg ccgctaagaa taacacgccg gaaactgaac ttcgggagtc cctcccgtct 420 cattgccagt gccgtcactg ccccagacat gggatacaaa aggagggcgt ggatgtggcg 480 accggcgaac agaaaacctg cgatatacag gagaaggaga gcgcctgatg tgccgcgtgg 540 atgtgaggga ccatgcaaag tacaatcatt cgaaaagaga catgatgtta cgcacacggg 600 gggcgttcta tgcatatctg acgtgacacg cggcaatggt atcacgcata gagtgggtaa 660 aagattctgc gtgaaatccg tctatatact tggcaagatt tggatggacg agaatatcaa 720 gacgaagaac catactaaca gcgtgatttt ctggctggtc agagacaggc gtccatttgg 780 cactccaatg gacctgggcc aagtctttaa tatgtatgat aacgagccca gtacagccac 840 agtcaagaac gatctgaggg atagatatca agttttacat aaatggcacg cgtcggttac 900 tggtggtgtc tatgcatcta aggaacaggc gataatcaga agttctacag agtcaataat 960 tatgtggtct ataatcacca ggaagccgcg aaatacgaga atcatactga gaatgcgtta 1020 ttattgtata tggcatgtac tcatgcatca aatccagtgt atgcaacatt gaaaatacgc 1080 atatatttct acgactcaat ttcaaattaa taaagacgaa acattatttc attgctctgt 1140 tcaacctgca tcgtatgatg cagtacatta tacaatacat gatctacagc tctaattaca 1200 agattaattg aaattacacc taatcgatct aaatatctaa taacttgagt cttaaagact 1260 cgtaagaata tcccagtctg aatccgtgaa cgagtccaga ctttgaagct caggaagcac 1320 ttgtgtatct gtagtgcttg cctgagattg tggttgaatt gtattcggag gtgtatgatg 1380 tcctggtcca gaaagaaggg ccggctcatg tgattgatga gccggaagta cagaggattt 1440 gggaccgtcc agataaagac gccattgttc aaacgagctg cagtgatggg ttccccggtg 1500 cgtgaatcca tgattcgcgc agttaatgac agaaaatatg aacagccgca cttcaagtct 1560 atcctcctcc gccttatccc cccctgatct cagttcgcct ctggcgtttc ttgaaaggag 1620 ctggaggggg actgtcgctg tcgaacacga aagcattctt gggaagcgga ggaggagtag 1680 agaggttctg agatgaagac gaataagaca ttcttaacag cccaattctt taatgctttg 1740 ttcttatctt cgtctaagta ctctttatag ctggattggg gcccaggatt gcacaagaag 1800 attgtcggaa tgcccccttt aatttgaacg ggctttccat actttgtgtt actttgccag 1860 tctctctggg cccccataaa ttccttgaag tgcttgagat aatgcggatc aacatcatca 1920 atgacgttat accatacgtc attactatag actcttgggc tgagatccaa gtgaccgcat 1980 aaataattgt gtgggccgag agaccgagcc cacattgtct tcccagtacg actatcgccc 2040 tctaaaacaa tacttatggg tctaaaaggc cgcgcagcgg tactgataac attctcagag 2100 gcccaactct cgagttcttc cggaactcga tcaaacgaag aaagaggata aggagaaaca 2160 taatctactc taggaggtgt aaatatcctt tctaaattgg actttaaatt atgatactga 2220 aaaatataat cttttggcat cttttcacgg ataatagcta gagcagcttc tgcagagccg 2280 gagtttaggg cctccgctgc agcatcatta actgtctgtt gacctcctct agcagatctt 2340 ccatcgatct gaaaagaacc ccagtcgatg taatctccgt ccttctcgat ataggactta 2400 acatcagagg aggacttagc tccctggata tttggatgga attgggagga gctatgagga 2460 tgggtgagat cgaaatgtcg tgcatttctg aatctggctt tacccttgaa ctggataagg 2520 gcatggatat gcagtgaccc atcctcgtgt ttctcctgcg cgactctaat aaataattta 2580 tcggaaggac aagatatgtt tcgcaggagg tccaggactg tctctttgga taatgggcat 2640 ttgggataag tgaggaatat gtttttagcg ctaactgaaa atgcgctaac acgaggcatt 2700 ttaaacagaa tgtattgggg agacgctgta aaactctcta caattgggga cttggggacg 2760 catttatacc agtgtcccca aatggcacgc tcgtaatttt ttggtgaaaa tcccacggtc 2820 aaaagcggcc atccgattaa tatt 2844 //