ID KC508670; SV 1; linear; genomic RNA; STD; VRL; 6932 BP. XX AC KC508670; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Boa arenavirus NL isolate 3 segment L, complete sequence. XX KW . XX OS ROUT virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Arenaviridae; Reptarenavirus. XX RN [1] RP 1-6932 RX DOI; 10.1099/vir.0.051995-0. RX PUBMED; 23468423. RA Bodewes R., Kik M., Stalin Raj V., Schapendonk C., Haagmans B., Smits S.L., RA Osterhaus A.; RT "Detection of novel divergent arenaviruses in boid snakes with inclusion RT body disease in The Netherlands"; RL J. Gen. Virol. 94(Pt 6):1206-1210(2013). XX RN [2] RP 1-6932 RA Bodewes R., Kik M.L., Raj V.S., Schapendonk C.M., Haagmans B.L., RA Smits S.L., Osterhaus A.D.; RT ; RL Submitted (21-JAN-2013) to the INSDC. RL Department of Viroscience, Erasmus Medical Centre, Dr Molewaterplein 50, RL Rotterdam 3015GE, Netherlands XX DR MD5; 4493de11fb51b81e7c1d9e460b646bdd. DR EuropePMC; PMC3911686; 24379418. XX CC ##Assembly-Data-START## CC Assembly Method :: Seqman v. 9 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6932 FT /organism="ROUT virus" FT /segment="L" FT /host="Boa constrictor" FT /isolate="3" FT /mol_type="genomic RNA" FT /country="Netherlands" FT /collection_date="05-Jun-2012" FT /db_xref="taxon:1303019" FT CDS 119..469 FT /codon_start=1 FT /product="Z protein" FT /note="Z" FT /db_xref="GOA:M4PJC1" FT /db_xref="UniProtKB/TrEMBL:M4PJC1" FT /protein_id="AGH06041.1" FT /translation="MSESTAIGLTTEVISIITFILVVIIFIVVIVNCVAMMTLKAITLK FT KRLMFCQGCGKNASLVILPCKNKVCMECALKMRCPVCYEACLWCENPDGSLSSLALINK FT ERNKHRDNPPEP" FT CDS complement(622..6819) FT /codon_start=1 FT /product="L polymerase" FT /db_xref="GOA:M4PUV6" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="UniProtKB/TrEMBL:M4PUV6" FT /protein_id="AGH06042.1" FT /translation="MGTISPEDAELNRLKELMLRVLSYERDLYKPNILSESAGQLAVNS FT LKLRSTIHELNCCRDTGLKFNGEVLDMNEILDRAIGPHETVKIVVPDGYLIDRENNVIS FT VLEASTRSDISDRNVKVELDRLKYEGMEQVTRGLGWTLNVIVISESRPRIGNIPESLMF FT KLLSTSLSILSYFVNTSGWISEEEYIELKKSMTSYDFKTLTEEFSGQNLLFDIESDSDP FT YYSLLQWFDTNKSSAPFSSKWDGPEITKRIEGFPRKGRQLRLLEILRNSFDGLNFESGH FT LSSLNKLKSLNLLNTRRQQNKVYDYLSLQLFVNSVTSTDFPNGWFPSVNDRLVKVESVV FT HGDVKCRHQLNKMIDSLTALQKESGSKTRAQDFIMLKEFLRDQLAVLKSPDELESSYGL FT IKRNSSVPDPSISLKIVDDYPTDGGDYTKYLSPSDCQIIEKVALNLILSQKTRSTPRSS FT HHEEFFYQSINGCLLLYKCSGEGQKAFSLLCRSNPKPKFFSFNINPSRLFPLIFSCDAI FT DGLIDQMMMLINPILEDNDRLQPSILKQKSVNEFLVAKPFAEDKIETLSQELRYLIYGI FT LTTPTKRLQLELQSQRYYIMDCLSLIHHVDLADKVVGKCLTYDEWFLRSLAHTLINNIL FT ECSNIGLFLKVTWCLNISYLCHLITKETPDRLSDLRDCYEKFFKPKHQFMTNVIFNCKS FT VDELVERMELEVNDFITRDEPTYESKPHLYEPILADFLNWLSREKFNGLDGEQLLDPKD FT YLTSGIDVLDLTSNKSTFKRCKGMTEDLDPTYNTDKLLKRVICERLHKRVVTKRSEEAS FT EIKDRQNGPSEKKSKSGWSPTGKPAKRTRMIYDEFSTIIQGLITELECTDTMDDFLVNI FT GKLLKEIELDLENLSRNVREEDPKLNNKFKKYDLVLESIESLLGSEIRDLIRSTCYRTK FT LSDFPSDLIKEDSCKSVVEDVMSKVPTDFSEADTVDVTNITAGMVRARYDSQEYFSSFK FT FLLLWAGFNDFQGTYDHRSGPQSSFLSISNKYRGESMLSTRVTNSEALQDRLLAIKYGA FT PTLRNILFSTLNLEMKDSEIGPNNKPLQFGLAIKEQVGGPRELYVGDSDTKLITRVLEE FT TSRNIGNKLNNSCLNSDKKFSSFMKRIARSFFENEIVLSMDHSKWGPFNSPLQYHLMFE FT AMEGINDIDGKRLDFSFAKTILKWHLFKAVETPQILAEDVILSSLDISLGRRDRQIGKE FT RTFETFMVDAVLSNKPVPSQVHSWFDMGQGILHHTSDLYGSLASEYITKKIKDIFGVRS FT STMNTSDDMVLLFHMKYKDRDDDQKDKLLLITNFLCLVSNCLNKHISPKFCCSPLVGEF FT KSHFEVEATMVPLFTKFFAASINNFRCKTPMELFNTCDAIVEQGICNGMSLKLADSLKG FT RMVEMLGWLGYVGDPLMKPVVSRQQDWLEGCLSYRKLRSLESWLMDVGIEKVKLEVLKL FT ELLKVIKELRESSIAPSVAYKKMVEISRSQLGEITLWFPTLNGEFKLIVRSKLNLGTTI FT NETCENLLIKKLINHYSRYSKQGLGLLIAEGLERSAFQSSVVTGFIGLSISLSGPCVRK FT GDGTFLTLRESKTVIKPVAEVFPSLVMQSVCAVGDWVCGVEDELSKQANKSIYMRTSLV FT NTAEFRFGLDELTAAIEMTMPDLFDKYLKDIVPPDKRLLMRHSWKVRPEMELLIECANE FT GLSIFDGRIDRQEEAVVLVDYYDPSRLLRRVMRLEKRGSERTARKGLQAIINRMILDSI FT LEPKIIDKVMVMDATKLAPYEGSMEELKTHGESGVRRYIQQVLLGRESHYRQKEDEPSE FT ITSNNVVVYGRGTPETPLEDGTWIKGAKLGTSNPIKLQCCFQQVSSDIKIQATLITHTG FT RAHYQDFMFLKRVIISDSDFDEPEMLDTLDFREVIIVENSKPNGKPCFLFMGCVIPLES FT DLVGSIMTHMSETEWEELWKLVRTYFITRMKGEISCLPKARFDALWGMVSRIFGYSTVE FT KVVDMGFHQLDSFAEFLTFTNRVFTTKGPTLVFHRLKGILVSYPAGPLLYKGHRLMLYE FT DWVSGTPEPEALED" XX SQ Sequence 6932 BP; 1942 A; 1541 C; 1244 G; 2205 T; 0 other; ctgtgtgggg atccgcgttt tacagtatct attcaaagag gcaaatccaa agcgacaaga 60 cctgaggagt gaaatcttga agggcgacat ctgtgtgtag ctggctttgg gacacagcat 120 gtcagaaagc acagctatag gtcttacaac agaggtcatc tcgattataa cattcatcct 180 tgttgtcatc atctttatag tggtcatagt gaactgcgtt gccatgatga ccctcaaggc 240 tataactctg aagaaaaggc tcatgttttg tcaaggctgt ggaaaaaatg caagtcttgt 300 tattcttcca tgcaagaaca aagtctgtat ggaatgtgcc ctcaagatga gatgccctgt 360 ttgctatgag gcatgtcttt ggtgtgagaa ccccgatggg tctctctcct cattagccct 420 gatcaacaaa gaaagaaaca aacacaggga caatcccccc gaaccataga gatccgacaa 480 gcaactccac cagacaggaa caaggggaga caaccaaaac aacaacaaag caacaaccca 540 gaccaccgga ggcggctctg ccgcctccgg tggtctgggg ggttcccgtg tctgtgtccg 600 ctcccgtggg cccgtgcatc tctagtcctc cagggcctca ggctctggag ttcccgatac 660 ccaatcctca tagagcatga gtctatgtcc tttatacaat agtggtcctg ctggatagct 720 cacaagtatc cccttcaatc tatgaaacac caaagtggga ccttttgtgg tgaaaactct 780 atttgtgaat gtcaggaatt cggcaaagga gtcgagctga tgaaagccca tatcgaccac 840 tttctccact gttgagtaac caaaaatcct gcttaccatt ccccataaag catcaaatct 900 agcctttggg agacatgata tttctccttt catccttgtt atgaaatatg ttctaactaa 960 cttccaaagt tcttcccatt cagtttctga catatgggtc attattgacc ccactaggtc 1020 tgactccagt ggaatcacac aacccatgaa cagaaagcat ggcttcccat ttggctttga 1080 attttctaca attataacct ctctaaaatc tagtgtgtcc aacatctcag gttcatcaaa 1140 atctgagtca gagataatca ctctcttaag aaacatgaaa tcctgataat gagcacgtcc 1200 tgtgtgtgtg attaatgttg cctgaatttt tatatcactg ctgacttgtt gaaagcagca 1260 ttgtagtttt attggattag atgttcctaa cttggcacct ttgatccatg taccatcttc 1320 tagaggggtt tctggagtcc ctctcccata cacaaccaca ttgttggatg tgatttcact 1380 tggttcatcc tctttttgtc tataatgcga ctccctacct aataaaacct gttgtatgta 1440 tcttctaaca ccagattccc catgggtttt caactcttcc atagaacctt catatggggc 1500 aagttttgtc gcatccatga ccatgacctt atcaataatt ttaggctcca atattgaatc 1560 cagaatcatc ctattaatta tcgcttgtaa accctttctt gcagtccttt cagatcctct 1620 tttctcaagc ctcataactc gtctgagcaa cctacttgga tcataatagt ctactagcac 1680 gactgcctct tcctgtctgt caattctacc gtcaaaaatg gatagccctt cattggcaca 1740 ctctattagc aattccattt caggtctaac tttccaagaa tgcctcataa gcagcctctt 1800 atctggtggt acaatgtcct tcaaatattt atcaaaaaga tcaggcattg tcatctcaat 1860 agcagcagtt aattcatcta atccaaacct gaactctgcg gtgttaacaa gtgatgttct 1920 catataaatg cttttgtttg cttgtttact caactcatct tcaactccac agacccaatc 1980 accaaccgca caaaccgact gcatgactaa ggaagggaaa acttcagcga ctggtttgat 2040 tacagttttg gattctctca gagttaagaa tgtgccatca cccttcctaa cacatggacc 2100 tgacaagctt atgctcaaac caataaatcc agtcactact gaactttgga aagcagacct 2160 ctcaagcccc tctgcaatca acaagccaag accttgcttt gaatatctgg agtaatgatt 2220 gattaacttt ttgatcagca agttctcaca cgtctcattt attgttgtac ctagattgag 2280 tttgctcctg acaatcaatt tgaactctcc attgagtgtg gggaaccaca aggtaatctc 2340 tcctaattgc gatcgactta tttccaccat ctttttatat gcaacagatg gcgctattga 2400 tgattctctt aactccttaa tcacctttaa tagctcaagc ttcaacacct caagtttaac 2460 tttctctatc cccacatcca tcaaccaact ctccagtgac cgaagctttc tataagaaag 2520 acagccttcc aaccagtctt gttgtcttga cactacaggc ttcattaaag gatcaccaac 2580 ataccccaac cagcctaaca tttcaaccat ccttcctttc aatgagtcag ctaactttag 2640 agacatgcca ttgcaaattc cctgttcaac tatagcatcg cacgtgttaa agagctccat 2700 cggtgtttta catctgaaat tgttgattga ggctgcaaag aactttgtga atagaggaac 2760 cattgtggcc tcaacttcaa aatgtgactt gaattcccca acaagtggac tgcaacaaaa 2820 cttgggtgag atgtgtttat tcaaacagtt cgacaccaag cacaagaaat tagtgattag 2880 aagcagtttg tctttttgat catcatctct gtccttgtat ttcatatgga acagtaggac 2940 catatcatca gatgtattca ttgtgcttga tctaacccca aaaatatcct ttatcttttt 3000 tgttatatac tccgatgcta gagaaccata aaggtctgat gtgtgatgta gaattccttg 3060 acccatgtca aaccatgagt ggacctgtga aggcacaggt ttgttagata aaacagcatc 3120 caccatgaat gtttcaaagg ttctttcttt ccctatttgt ctatccctcc ttcccaaact 3180 tatatcaaga gatgaaagga taacatcctc agccaaaatt tggggtgttt ctaccgcctt 3240 gaataggtgc cattttagaa ttgtcttggc aaatgaaaaa tctagccgtt ttccatctat 3300 atcattgata ccctccatgg cctcaaacat caagtggtac tgaagaggac tgttaaaagg 3360 accccatttc gaatgatcca tgctcagcac tatctcattc tcaaaaaagg atctcgcaat 3420 ccttttcata aagctagaga actttttgtc tgagttgagg caactattat tgagtttatt 3480 gccaatgttt cttgaggtct cttctaggac tcttgttatt aattttgtat cagaatcccc 3540 gacatacagt tctctgggcc caccaacctg ctcctttatt gcgagtccaa attgaagtgg 3600 tttattgttt ggcccaattt cagaatcttt catttccaaa tttaatgtgg aaaaaaggat 3660 atttcttaat gtaggtgctc catactttat tgccaaaagc ctatcctgca atgcttctga 3720 attcgtgacc cttgttgaga gcatactttc tcctctatat ttattggaaa tcgataagaa 3780 ggagctttgg gggcctgatc tgtgatcata tgtcccttgg aaatcgttga atccagccca 3840 cagtaataaa aatttaaaac tggagaaata ttcttgagag tcatatctag ctctcaccat 3900 acctgctgtg atgtttgtca catccacagt atcagcttca gaaaagtctg ttggaacttt 3960 tgacatgaca tcttccacca ccgatttaca gctgtcttct ttgatcaagt ctgagggaaa 4020 gtctgacagt tttgtcctgt aacaggttga tcgtattaga tctctgattt cactacctaa 4080 tagtgattca attgattcta ggactaaatc atatttcttg aatttgttgt tcagcttagg 4140 atcttcctct ctcacattcc tagaaaggtt ctccaagtct agctcaatct ctttcaatag 4200 tttcccaata tttacaagaa agtcatccat tgtgtctgtg cattccaact ctgtgattag 4260 tccctgaatg attgtggaaa attcatcata aatcatccta gttctttttg ctggtttgcc 4320 agttggagac caacccgatt ttgatttttt ctcactggga ccattctgac gatccttgat 4380 ttcacttgcc tcttctgaac gtttagtcac aactcttttg tgcagtcttt cgcaaataac 4440 cctctttagc aatttatctg tgttgtaagt tggatcaaga tcttctgtca tccctttaca 4500 tcttttaaaa gtacttttat ttgaagttaa gtctaagacg tcaatgcctg atgtcaaata 4560 atccttaggg tccagaagtt gttcaccatc taatccattg aatttctctc ttgatagcca 4620 attcagaaag tctgctagta tcggctcata caggtgtggt tttgattcgt aagtaggctc 4680 atctcttgtt atgaaatcat tcacctcaag ctccatcctt tcaaccaatt catctactga 4740 tttgcagttg aaaatgacat tagtcatgaa ttgatgcttt ggtttaaaga atttctcgta 4800 gcagtctctt aaatccgaca gtctatcagg agtttctttt gtgatgaggt gacaaagata 4860 ggaaatgttt agacaccaag tcaccttgag gaacagacct atgttggaac attccagaat 4920 gttattaata agtgtatgag caagtgacct caggaaccac tcatcatatg tcaagcactt 4980 tccaacaact ttatctgcca aatcaacatg atgtatcagt gataagcaat ccatgatgta 5040 ataacgttga gactgaagtt ccaactgcaa ccttttggta ggggttgtca agatcccata 5100 aatcaaatac cttaactctt ggctcagggt ttctatttta tcttcagcaa aaggtttagc 5160 tactaaaaat tcattcacag acttctgctt gagaatggaa ggttgaagtc tgtcattatc 5220 ctctaatata gggttgatta gcatcatcat ttgatcaatg agtccatcaa tcgcatcaca 5280 actaaaaata agagggaata gccttgatgg attgatgtta aatgaaaaga acttgggttt 5340 tggattcgat ctacagagca aactaaatgc cttctgacct tcacctgaac acttatacaa 5400 caagaggcaa ccattaattg actggtaaaa gaattcctca tgatgacttg atcttggtgt 5460 gcttctagtt ttttgagaca atatcaaatt taatgcaact ttttcaatta tctgacaatc 5520 agatggtgat aagtattttg tgtaatcacc accatcagtt ggataatcat cgacaatctt 5580 cagactgatg cttggatctg ggacacttga atttcgtttt atcaacccgt aagatgattc 5640 caattcatca ggactcttca acactgctaa ttggtctcta aggaattcct tcagcatgat 5700 gaagtcctga gctctcgttt tacttcctga ctctttctgt aaagctgtta aagagtctat 5760 catcttgttt aactgatgtc tacatttaac atcaccatgg accactgatt caaccttaac 5820 taatctgtca ttgacacttg ggaaccaacc attgggaaag tctgttgatg tgacagaatt 5880 gacaaacaac tgcagcgaaa ggtaatcata cactttattc tgttgtcttc gtgtgttaag 5940 aagatttagg gatttcagtt tgttcagcga gctcagatgg ccagattcaa agttaagtcc 6000 atcaaaagaa tttctgagga tttctaggag tctaagttgc ctaccctttc ttggaaagcc 6060 ttcgattctc ttagtgattt ctggaccatc ccactttgag ctaaatggtg cagagctttt 6120 gtttgtatca aaccattgca gtagactgta atatgggtct gaatcagatt caatatcaaa 6180 taacagattt tgaccagaaa attcttcagt caaagtcttg aagtcgtagc tagtcattga 6240 tttctttagt tctatgtact cctcctcaga gatccagcct gacgtattga cgaaataaga 6300 taggattgaa agagatgtag acaacaactt gaacataagg gactcaggta tgttcccgat 6360 cctaggcctt gattcagata taacaattac attcagtgtc caaccgagac ccctagtgac 6420 ctgttccatt ccctcatatt tcaatctatc caactctact ttgacattgc gatcactaat 6480 atcagatctt gtgcttgctt ctagaacact aattacattg ttttctctat caataagata 6540 accatcaggt actacaattt tcactgtctc atggggacct atagctctat ctaggatctc 6600 attcatgtca agaacttcac cattgaactt caaacctgtg tctctgcaac aattcagttc 6660 gtgaatggtt gatctcagtt ttaacgagtt aactgcaagt tgtcctgcag actctgaaag 6720 tatgtttggt ttatagaggt ctcgttcata tgataggacc ctgagcatca gttctttgag 6780 tctgttgagc tctgcatctt caggactgat ggttcccatt gtggggcttg gcctggtttg 6840 gctgcgttgg ggtgtctctg ctgctgtgct tcgatgcact tctcttcaat aaagtataac 6900 tattgaagat tctcatatac gcggatcctc ag 6932 //