ID KC508669; SV 1; linear; genomic RNA; STD; VRL; 3351 BP. XX AC KC508669; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Boa arenavirus NL isolate 3 segment S, complete sequence. XX KW . XX OS ROUT virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Arenaviridae; Reptarenavirus. XX RN [1] RP 1-3351 RX DOI; 10.1099/vir.0.051995-0. RX PUBMED; 23468423. RA Bodewes R., Kik M., Stalin Raj V., Schapendonk C., Haagmans B., Smits S.L., RA Osterhaus A.; RT "Detection of novel divergent arenaviruses in boid snakes with inclusion RT body disease in The Netherlands"; RL J. Gen. Virol. 94(Pt 6):1206-1210(2013). XX RN [2] RP 1-3351 RA Bodewes R., Kik M.L., Raj V.S., Schapendonk C.M., Haagmans B.L., RA Smits S.L., Osterhaus A.D.; RT ; RL Submitted (21-JAN-2013) to the INSDC. RL Department of Viroscience, Erasmus Medical Centre, Dr Molewaterplein 50, RL Rotterdam 3015GE, Netherlands XX DR MD5; 82a7abf15bdf0d2cb549fbaa2aad63e3. DR EuropePMC; PMC3911686; 24379418. XX CC ##Assembly-Data-START## CC Assembly Method :: Seqman v. 9 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3351 FT /organism="ROUT virus" FT /segment="S" FT /host="Boa constrictor" FT /isolate="3" FT /mol_type="genomic RNA" FT /country="Netherlands" FT /collection_date="05-Jun-2012" FT /db_xref="taxon:1303019" FT CDS 135..1418 FT /codon_start=1 FT /product="glycoprotein" FT /note="GP protein" FT /db_xref="GOA:M4PN05" FT /db_xref="UniProtKB/TrEMBL:M4PN05" FT /protein_id="AGH06039.1" FT /translation="MAGWTQLPLFSILLLMVPQLTLGTIGEMLSLAASGNSSICHGMQF FT TEPTQSFMGILPNESRPMFIFSIMHSETVPKVGKTLKISHDMKLFGEEALNYMIFVNRI FT VFEPMKYHNISGSCRQQGFKACVRVYSDLVNNSRGFPSVKLGFTANELNKTHRANPNNM FT GFKICISCRDHNGVRLVVYSKINRTAQLMMCPNELIYGFDFTVNSTSTKTDEETVLPLL FT NVTGYSCVALHNKNMLTHHNLALSSGSKVDNTLEPGCDSNVGLFGHSTGTDYGWGLANF FT FSAGITNSLQISQLEHVTDAIACKIAKTSNYTTTALFLLNKEEGEIRDHVIEHEIALNY FT LLAHQGGLCNIVKGPMCCSDIDDFRRNVSDMIDRVHEEMKKFYHEPDPFGGLGTWGFYG FT TMFGHILQWIPIMIMVIIVCFVCNWVRR" FT CDS complement(1568..3322) FT /codon_start=1 FT /product="nucleocapsid protein" FT /note="NP protein" FT /db_xref="GOA:M4PJ70" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/TrEMBL:M4PJ70" FT /protein_id="AGH06040.1" FT /translation="MAALQRAAVNQLALKKKLNRVLTPYQGDLNQQIFIDIKALKQGLD FT PKKVNDVLRRLRKETKGAKDLEKLRDLNEEVAGWSSMVAKQTTVEIDSTMLTDEEIMQC FT VENIEIIKKKAEYKGGLRPKLSEFERDTGMSSDEHEQFNKLFSRFVPKKEENKRNEVLK FT PRSWVGINPKDLANQFGTSPAVTITLMMMRTNSPFKDILEALNDISILDSGMFVNSAVI FT KAMAISHACLECVEFSVPKNSSGYNVTVKSVVKAANAISGLPKLEKIVLDDENRVKVLQ FT SLLEVQKEFGIKIVVDEERSLFEDLFYKVCVSPNGPCVISVRSELTGRGWENTIFRLRR FT PPPYAPRLYPDLMDLDMDAIAPIKPIPASSDPSSNEMDEFIKGEKTNEEPEVEVIDPRT FT PFLLKACEKIFRBKKPVFLDIEGSPQDPVEIAFLNTDSSEFIHIFRMPKDKENFKKSSK FT HCHGLLLDDISNHPNLYSDKNIEALFAKLPSDSQILSQGSDIEECLKFFGRKDITVNDC FT KWKKEDYLIYHEDLLDNYADSLPCVHSGAVKDKKGALMAPHCALLDCMMFSRKYSGKSI FT KHPEPATI" XX SQ Sequence 3351 BP; 871 A; 728 C; 705 G; 1045 T; 2 other; cgagttttcc agtatcgaac aaaataaata ttcaaaaggg attcatctta aactagcaat 60 cacaagggag aagacacgaa agagccagca agagatacaa agaatcaggg cccttgccca 120 caagagcagc ccccatggct ggctggactc aacttccact cttctcaatt ctgttgctca 180 tggtgcccca attgacactt gggacaattg gtgagatgct ttctctagca gcatctggta 240 actctagcat ctgtcacggc atgcagttca cagagccaac tcaatcattc atgggaatct 300 taccaaatga atcccggcca atgttcatct tctcaatcat gcatagtgaa acagtaccaa 360 aggtggggaa aactttgaaa atcagccatg atatgaaact ctttggtgaa gaagccctca 420 attatatgat ctttgttaat aggattgtct ttgaaccaat gaagtatcac aacatatctg 480 gttcttgcag acagcaaggg ttcaaagctt gtgtgagggt ctactctgat ttggtcaaca 540 attccagggg atttccatca gtgaaattgg ggtttacagc caatgaactc aacaagaccc 600 atagggccaa ccctaataac atgggattca agatctgcat atcctgtaga gatcacaacg 660 gggtgagatt agttgtttat agcaagatta accgtactgc acaattgatg atgtgcccca 720 atgagttaat ctacggattt gatttcaccg tgaattcgac atcgacaaaa acagatgaag 780 agactgtctt accattgctg aatgtgacag gctattcctg tgtcgctctg cacaacaaga 840 acatgctcac ccaccacaat cttgctctct ccagtggttc caaagtggac aacacactag 900 agccaggttg tgattccaat gtggggcttt tcggtcatag cacaggaaca gactatggct 960 ggggtcttgc aaatttcttc agtgcaggca taactaactc acttcaaata tcacaattag 1020 aacatgtaac tgatgctatt gcatgcaaaa ttgctaaaac atccaattat acaaccacag 1080 ctctgttctt actaaacaag gaagagggtg aaatcagaga tcatgttatt gagcatgaaa 1140 tagctttaaa ctatctgcta gctcaccaag gtggactttg caatattgtg aagggtccta 1200 tgtgttgttc agacattgat gactttagga ggaatgtttc tgatatgata gacagagttc 1260 atgaagaaat gaagaagttt tatcatgagc cagatccttt tggtggtctt ggcacttggg 1320 ggttttatgg caccatgttc ggacatatct tacaatggat tccaataatg attatggtca 1380 tcatagtttg ctttgtgtgc aactgggtga gaaggtaagg caacaggacc accctccggt 1440 tctttggtgc cccgtctgcc cgccctgggt gctttgttcg ccggggggtt cttgttcttt 1500 ggttggttgg ggtccttgtt cggtcgcccg ctttgggtgc tctgtttgcc gggctgttgt 1560 tggctgccta gattgtggcg ggttctgggt gtttgatgct cttcccagag tactttctgg 1620 aaaacatcat acagtccaga agggcacagt gaggtgccat cagtgcaccc ttcttatctt 1680 taacagcccc tgaatgcaca catggtaaac tatctgcata attgtcgagc agatcttcat 1740 gataaatgag atagtcctcc tttttccatt tacaatcatt cacagttata tccttcctgc 1800 caaagaattt gaggcactct tctatgtctg aaccttgtga aagtatttga gaatcggaag 1860 gtagctttgc gaacaaggct tcaatgtttt tgtcagagta aagattagga tgattagata 1920 tgtcatccaa caacaaacca tgacaatgtt ttgatgattt tttgaaattc tccttgtcct 1980 taggcattct gaatatgtgg atgaactcac tggagtctgt gttgagaaag gcaatctcga 2040 caggatcctg aggtgatcct tcaatgtcaa ggaagactgg tttcttatyt ctgaagatct 2100 tttcacaggc cttcaaaaga aaaggtgttc tggggtctat gacttcaact tctggttctt 2160 cattggtttt ttcacccttg atgaactcat ccatttcatt ggacgatggg tccgatgatg 2220 ctgggatggg tttgataggt gctatggcat ccatatcaag atccatcaag tcaggataaa 2280 gcctgggtgc atatggtggt ggccttctca atctgaaaat tgtgttctcc cagcctctcc 2340 ctgttaactc agatctgact gaaatgacac atggcccatt tggagataca cacaccttgt 2400 agaaaagatc ttcaaacagg cttctctcct catcaacgac aatctttatt ccgaactctt 2460 tttggacttc aagaagggat tgcaggacct tgaccctgtt ctcatcatcc agtactatct 2520 tttccagttt gggtagtccc gagatggcat ttgcagcctt gactactgat tttactgtca 2580 cattgtagcc tgatgaattt tttggaacag aaaattcaac acactccara catgcatgag 2640 agattgccat cgctttgatt acagcagagt taacaaacat accagagtcc aggatggaga 2700 tatcattcag tgcctctagt atgtctttga agggtgaatt tgtcctcatc atcattaacg 2760 ttatagtgac agcaggtgag gtgccaaact gattcgctaa gtcttttggg ttgataccaa 2820 cccaggatct gggcttaagt acttcattcc tcttgttttc ttctttttta gggacaaatc 2880 tgctgaagag tttgttgaat tgttcgtgtt catcactgct cattcctgta tctctttcga 2940 actcacttaa ttttggtctt aaaccacctt tatattctgc ctttttcttt attatctcta 3000 tgttctcaac acattgcatt atttcttcat ctgtcagcat tgttgagtct atctcaactg 3060 tggtttgttt ggcaaccata cttgaccacc cagccacttc ttcatttaaa tcccttaact 3120 tctcaaggtc cttagctccc tttgtctcct ttctcaatcg tctcagtaca tcatttacct 3180 tctttggatc tagcccttgc ttcagggctt tgatgtctat gaaaatctgc tgattcaggt 3240 ccccctgata aggagtcaac actctgttta gttttttctt caatgctagc tggttgacag 3300 ccgctctttg gagagccgcc attgtgtagt cctggcttgt ctgttcgctc a 3351 //