ID KC508642; SV 1; circular; genomic DNA; STD; VRL; 2722 BP. XX AC KC508642; XX DT 28-APR-2013 (Rel. 116, Created) DT 01-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Soybean chlorotic blotch virus strain SbCBV1, complete genome. XX KW . XX OS Soybean chlorotic blotch virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2722 RA Kashina B., Nielsen S.L., Nicolaisen M.; RT "Molecular identification of Strains of Soybean Chlorotic Blotch Virus from RT Phaseolus lunatus L. in Nigeria"; RL Unpublished. XX RN [2] RP 1-2722 RA Kashina B., Nielsen S.L., Nicolaisen M.; RT ; RL Submitted (21-JAN-2013) to the INSDC. RL Department of Agroecology, Aarhus University, Forsogsvej 1, Slagelse 4200, RL Denmark XX DR MD5; f0079c692806c0a503873e037155565a. XX CC ##Assembly-Data-START## CC Assembly Method :: CLC Main workbench v. 6.8 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2722 FT /organism="Soybean chlorotic blotch virus" FT /host="Phaseolus lunatus L." FT /strain="SbCBV1" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /collection_date="Oct-2011" FT /note="genotype: B1" FT /db_xref="taxon:761702" FT CDS 114..473 FT /codon_start=1 FT /product="V2" FT /note="Pre-coat" FT /db_xref="GOA:M9YWG3" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:M9YWG3" FT /protein_id="AGK24650.1" FT /translation="MWNPLVEPLPCTPHGLRCVLALKFLKLFEETHELSATEISQLSLL FT KSVIHARKYHEAKRRYRNFYTFVEGSEEVELRQSTCHAHCHPQVQQEEGLGEPAHVSEA FT HDVQDVEESRCALRL" FT CDS 277..1038 FT /codon_start=1 FT /product="V1" FT /note="Coat" FT /db_xref="GOA:M9YSM1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M9YSM1" FT /protein_id="AGK24656.1" FT /translation="MKRNADIVISTPLSKVRRRLNFDSPRAMPTVIPRSNKKRAWENRP FT MYRKPMMYRMWRSPDVPFGCEGPCKVQSYDAKHDVSHTGTVLCCSDITRGSGLTHRVGK FT RFTIKSILLMGKIWMDDNIKLKNHTNIVTFFLVRDRRPSDKPYAFGSVFNMFDNEPTTA FT TVKQDNRDRFQVIRKFHATVTGGQYASKEQALVKKFFKINHKVVYNNQEGAEYKNHQEN FT ALLLYMACSHASNPVYATIKARVYFYDSVTN" FT CDS complement(682..972) FT /codon_start=1 FT /product="C5" FT /db_xref="GOA:M9YWG6" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:M9YWG6" FT /protein_id="AGK24655.1" FT /translation="MTTCHIEKQSILLVVLVLRTFLIVVDDLVVNFKKFLHQRLLLRSI FT LATSNCGMKLTNNLESITVILFNCRCRGFIVEHVEHTAKCIWLVRWAPIAH" FT CDS complement(1035..1448) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:M9YSL8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M9YSL8" FT /protein_id="AGK24651.1" FT /translation="MDLRTGEPITAVQAGNGVYIWTVPNPLHFKVMQHHMEIPGLPYNI FT IKLRVQFNHNLRKALGLHKCWITLTILTRLTRSTNPSGIFLRVFKTQVLRYLNSIHVIS FT INGVIRAINHCLYDVLVGTEEVRTKYEIKFNLY" FT CDS complement(1180..1596) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:M9YRZ6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M9YRZ6" FT /protein_id="AGK24652.1" FT /translation="MRSSSASPSHSTQVPIKVRHRQAKKRQIRRRRVDLRCGCSYFVSI FT NCANHGFTHRGTHHCSSSREWRLYLDGPKPSALQSDATSHGNPGVAIQHNQATSAVQPQ FT PQESVRTPQVLDNLDDIDATDPLYESVWDFLEGL" FT CDS complement(1496..2584) FT /codon_start=1 FT /product="C1" FT /db_xref="GOA:M9YNZ9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M9YNZ9" FT /protein_id="AGK24653.1" FT /translation="MPRSGAFRVHAKNIFLTYPRCSLSKDEALELLLGVTTPVNKKFIK FT VARELHEDGQPHLHVLLQFEGKLQITNPRLFDLVSRTSAHVFHPNVQGAKSSSDVKSYI FT DKDGDTVSWGEFQIDARSSRGGKQSANDAYAAAINTGSPTKALQLLKEQAPKDYVLQFH FT NIKGNLERIFMKVSTPWTCPYDPRSFNNVPDVMLDWVSVNVKDPAARPNRPISIVVEGD FT SRTGKTMWARSLGVHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQHDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPSSSYKSYLDEERNSSLKQWALKNAIFVSIAFPL FT YTSPDQSQTSTSEKEANPTTPC" FT CDS complement(2134..2427) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M9YYH7" FT /protein_id="AGK24654.1" FT /translation="MGSHISMFCCNSKVNSRSQILDCSTLSRERLLMCSTQTYKELNPA FT PTSSPTSTRTATPCHGESFKSMQDRVVEVNNLRTTLTPQQLTREVRLRLSSY" XX SQ Sequence 2722 BP; 696 A; 638 C; 623 G; 765 T; 0 other; acctgagggc cgcgcttttg gtgccccctt tcgaccaatc agaatgcgcg ctgatagcta 60 tcataagcct tgggccgcgt ataaagtagc ccactcctta ttgggctaca aacatgtgga 120 acccattggt cgaaccactc ccctgcaccc cccacggtct tcgttgtgta ctcgctctca 180 agtttctgaa attgtttgag gaaacccacg agctctcggc caccgagatt tctcaactga 240 gtttgttaaa atcagttatc cacgcaagga agtatcatga agcgaaacgc cgatatcgta 300 atttctacac ctttgtcgaa ggttcggagg aggttgaact tcgacagtcc acgtgccatg 360 cccactgtca tccccaggtc caacaagaag agggcctggg agaaccggcc catgtatcgg 420 aagcccatga tgtacaggat gtggaggagt ccagatgtgc ccttcggctg tgaagggcct 480 tgtaaggtcc agtcgtatga cgccaaacat gacgttagtc acacgggtac agttctctgc 540 tgttccgata ttactcgtgg gtccggattg acacatcgtg tcggcaaaag gtttaccatc 600 aagtccattc ttttgatggg caagatttgg atggacgaca atatcaaatt aaagaaccac 660 actaatatcg tcaccttttt cttagtgcgc gataggcgcc catctgacaa gccatatgca 720 tttggcagtg tgttcaacat gttcgacaat gaacccacga cagcgacagt taaacaagat 780 aaccgtgatc gattccaagt tattcgtaag tttcatgcca cagttactgg tggccaatat 840 gcttctaagg agcaggcgtt ggtgaagaaa ttttttaaaa ttaaccacaa ggtcgtctac 900 aacaatcagg aaggtgcgga gtacaagaac caccaggaga atgctttgct tctctatatg 960 gcatgtagtc atgcttctaa cccagtttat gctactatta aggctcgtgt gtatttttat 1020 gattcagtca caaattaata aagattgaat tttatttcat atttagtacg cacttcttca 1080 gtgccaacaa gtacatcgta caaacaatga ttaatggctc ttataactcc attaatcgaa 1140 attacatgaa ttgaatttaa ataacgcaac acttgagtct taaagaccct caagaaaatc 1200 ccagacggat tcgtagagcg ggtcagtcgc gtcaatatcg tcaaggttat ccaacacttg 1260 tggagtccta acgctttcct gaggttgtgg ttgaactgca ctcgtagctt gattatgttg 1320 tatggcaacc ccgggatttc catgtgatgt tgcatcactt tgaagtgcag agggtttggg 1380 accgtccaga tatagacgcc attccctgct tgaactgcag tgatgggttc ccctgtgcgt 1440 aaatccatgg tttgcgcaat taattgagac gaaataggaa cagccacagc gaagatcaac 1500 acggcgtcgt cggatttgcc tctttttcgc ttgtcgatgt ctgactttga tcgggacttg 1560 tgtagagtgg gaaggcgatg ctgacgaaga tcgcattttt caatgcccac tgcttcaggg 1620 atgaatttct ttcttcatcc aaataactct tataagagct actgggtccc gggttgcata 1680 aaaagatggt gggaattccc cctttaattt gaatcggttt accgtatttc gtgttgctct 1740 gccaatcatg ctgggccccc atgaattcct tgaagtgctt taggtagtgc ggatctacgt 1800 catcgatgac gttataccat gcattattgc tgtaaacctt tggactcagg tctagatgac 1860 cgcataggta attgtgtacc cccaaagacc gcgcccacat cgtcttcccc gttctggaat 1920 caccttcaac gacgatacta atgggtctgt taggccgcgc agcgggatct ttcacattaa 1980 cagacaccca atcaagcata acgtccggga cgttgttaaa tgaacgggga tcataaggac 2040 aagtccaggg agtggacacc ttcatgaaaa tcctttctaa attaccttta atgttgtgga 2100 actgtaaaac ataatccttc ggagcttgtt cttttagtaa ctggagagcc ttagtcggac 2160 ttcccgtgtt aattgctgcg gcgtaagcgt cgttcgcaga ttgtttacct ccacgactcg 2220 atcttgcatc gatttgaaac tctccccatg acacggtgtc gccgtccttg tcgatgtagg 2280 acttgacgtc ggagctggat ttagctcctt gtacgtttgg gtggaacaca tgagcagacg 2340 ttctcgagac aaggtcgaac agtcgaggat ttgtgatctg gagtttacct tcgaattgca 2400 gcagaacatg gagatgtggc tgcccatcct cgtgtagctc tcgagctacc ttgatgaact 2460 tcttgttcac aggtgtggtt acacccaaga gtaactctag agcttcgtct ttcgataatg 2520 agcacctggg atatgtgagg aagatattct tggcatgtac tctaaatgct ccgctcctag 2580 gcatgcttgc ttccgtacat acaccaattg gtgtaaaact ctccccccct cctatcggtg 2640 tattggggta cctaatatac tactagtgtc tatcacaata tgacatacgt gtcacacatc 2700 tagcggccct cagtataata tt 2722 //