ID KC465466; SV 2; circular; genomic DNA; STD; VRL; 2766 BP. XX AC KC465466; XX DT 17-APR-2013 (Rel. 116, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 4) XX DE Chilli leaf curl Bijnour virus-India isolate India/India/Bijnor/India/2012 DE segment DNA-A, complete sequence. XX KW . XX OS Chilli leaf curl Bijnour virus-India OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2766 RA Kumar A., Khan Z.A., Prasad S.C., Sarin N.B.; RT ; RL Submitted (09-JAN-2013) to the INSDC. RL School of Life Sciences, Jawaharlal Nehru University, New Mehrauli Road, RL New Delhi, Delhi 110067, India XX RN [2] RC Sequence update by submitter RP 1-2766 RA Kumar A., Khan Z.A., Prasad S.C., Sarin N.B.; RT ; RL Submitted (08-JAN-2015) to the INSDC. RL School of Life Sciences, Jawaharlal Nehru University, New Mehrauli Road, RL New Delhi, Delhi 110067, India XX DR MD5; 4fee2f220e32c959e433ba0f2c39209a. DR EuropePMC; PMC5127021; 27834936. XX CC On Jan 8, 2015 this sequence version replaced gi:478621876. XX FH Key Location/Qualifiers FH FT source 1..2766 FT /organism="Chilli leaf curl Bijnour virus-India" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/India/Bijnor/India/2012" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="infected leaf" FT /collection_date="Jun-2012" FT /db_xref="taxon:1701401" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:M9TKJ6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M9TKJ6" FT /protein_id="AGJ03636.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPTSQLRQPIWSSCHCPHCPRHQSKGMGEQAHEQ FT KAQDVRDVQKSGCS" FT gene 307..1077 FT /gene="CP" FT CDS 307..1077 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="encapsidation protein" FT /db_xref="GOA:M9TJ03" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M9TJ03" FT /protein_id="AGJ03637.1" FT /translation="MSKRPADIIISTPVSKVRRRLNFDSPYGARATAPIVRVTKAKAWA FT NRPMNRKPRMYGMFRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDCGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYVSKDQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1122..1484) FT /gene="REn" FT CDS complement(1122..1484) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer protein" FT /db_xref="GOA:M9TF03" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M9TF03" FT /protein_id="AGJ03638.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFRILKHDSRPFLTKH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPPTGLFLRVFRTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVME" FT gene complement(1204..1623) FT /gene="TrAP" FT CDS complement(1204..1623) FT /codon_start=1 FT /gene="TrAP" FT /product="transcription activation protein" FT /note="enhances transcription" FT /db_xref="GOA:M9TFF4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M9TFF4" FT /protein_id="AGJ03639.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCTYYISIN FT CHDHGFTHRGVHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNKARHNQDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWSFLESLQNPGP" FT gene complement(1526..2611) FT /gene="Rep" FT CDS complement(1526..2611) FT /codon_start=1 FT /gene="Rep" FT /product="replicase" FT /note="replication initiation protein" FT /db_xref="GOA:M9TD55" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M9TD55" FT /protein_id="AGJ03640.1" FT /translation="MPRTPSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHVHALIQFKGKSKFRNPRHFDVTSPIPPGHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NLISNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWAGVNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT gene complement(2278..2454) FT /gene="AC4" FT CDS complement(2278..2454) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M9TKK0" FT /protein_id="AGJ03641.1" FT /translation="MGLCMSMPSSNSKVNPSSETLDISMSLPQFHQDISIRTFRELNQL FT QMSKHTSTKTETF" XX SQ Sequence 2766 BP; 759 A; 596 C; 632 G; 779 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccccacaaca cacgtgctga caatgacatg 60 ttaaccaatg aaattcacgc tacatggctt atttagtgcg tggggaccaa taaatagact 120 tgctcaccaa gtttggatcc accaacatgt gggatccatt agtaaacgag tttcccgaaa 180 ccgttcacgg ttttaggtgt atgctagcag tgaaatatct ccagctagta gagaagacgt 240 attctcccga tactctcggg tacgatttaa ttagggattt aatttcagtc atcagggcta 300 gaaattatgt cgaagcgacc agcagatata atcatttcca cgcccgtttc gaaggtacgc 360 cgacgtctca acttcgacag cccatatgga gctcgtgcca ctgcccccat tgtccgcgtc 420 accaaagcaa aggcatgggc gaacaggccc atgaacagaa agcccaggat gtacgggatg 480 ttcagaagtc cggatgttcc tagaggatgt gaagggccat gtaaggtcca gtcctttgag 540 tctagacatg atgtctctca tattggcaaa gtcatgtgtg ttagtgatgt tacccgaggg 600 actggactca cacatcgcgt agggaagcga ttctgtgtga aatcagtcta tgtgctggga 660 aagatatgga tggatgaaaa catcaagaca aaaaaccata ctaacagtgt catgtttttt 720 ttggtccgtg accgtcgtcc tacaggagct ccccaggatt gcggggaagt gtttaatatg 780 tttgacaatg aaccaagcac agcaacggtg aagaacatgc atcgtgatcg ttatcaagtt 840 ttacggaagt ggcatgcgac tgtgacggga ggaacatatg tatctaagga ccaagcatta 900 gttaggaagt ttgttagggt taataattat gtcgtttata atcaacaaga ggccggcaag 960 tatgagaatc atactgaaaa cgcattaatg ttgtatatgg cctgtactca cgcatcaaat 1020 cctgtatatg ctactttgaa aatccggatc tatttctatg attcggtcac aaattaataa 1080 atatcgagct ttatatcata tgaagtccat acatcaatcg ttcactccat tacattatcc 1140 aatacatgat aaactgctct tattacatta taaatcccta taacacctag catatccagg 1200 tacctaagga cctgggttct gaagactctc aagaaaagac cagtcggagg gcgtaagccc 1260 gtccagattt tgaaagttag aaaacacttg tgaagtccca gggctttccg caggttgtgg 1320 ttgaactgta tttgaatctt gattatgtcg tgctttgtta ggaagggcct gctgtcgtgt 1380 ttcaaaattc tgaaatacag gggatttcga atttcccagg tatatacgcc actctctgct 1440 cgatccgcag tgatgtactc ccctgtgcgt gaatccgtga tcatggcagt tgatcgatat 1500 ataatatgta cacccacacg gcagatcaac tcgcctcctg cgaatgctct tcttcttctt 1560 ctgtgggagc gatgttttcg cgaccggaat agagtggttc ttcgagtgtg atgaagactg 1620 cattcttgat tgcccactgc ttcagtgctg catttttttc ttcgtccaga tattccttat 1680 agctgctgtt tggaccttta ttgcacagga agatagtggg aattccacct ttaatcatga 1740 ccggctttcc gtacttggtg ttgctttgcc agtcacgctg ggcccccatg aattctttaa 1800 agtgctttag atagtgggga tcaacgtcat caatgacgtt ataccaggca tcattgctaa 1860 acacctttgg gctcagatca agatgtccac acaagtaatt gtggggtcct aaacaccgag 1920 cccacattgt tttgcctgtt ctactatccc cctctatgac tatgcttatg ggcctaaaag 1980 gccgcgcagc ggcacacaca acattaacac cggcccaatc gacaagttct ggaggaactc 2040 tgtcgaagga tgaaattgaa aaaggagaaa cgtaaacctc agaacgaggt tggaaaatgc 2100 gatccaaatt gctaattaaa ttgtgaaact gcagaacata atcctttggg gctaattcct 2160 ttaatacttt caatgcatct tctttattcc ccgtgttaat cgccttagca tatgcatcgt 2220 tggccgtctg ctgaccacca cgagcagatc gtccatcgat ctggaaaaca ccccattcta 2280 gaacgtctcc gtctttgtcg atgtatgctt tgacatctga agctgattta gctccctgaa 2340 tgttcggatg gaaatgtcct ggtggaattg gggaagtgac atcgaaatgt ctagggtttc 2400 tgaacttgga tttacctttg aattggatga gggcatggac atgcagagac ccatcctggt 2460 gtttttcttg tgccactctg ataaataatt tatcagatgg gcaatttatt gactgaagaa 2520 tttcgagcat ttgctctttc ggaattgggc atttgggata agtgaggaag atatttttgg 2580 cattaacaca aaacgacggc gttcgaggca taaggtaaac gccgatgaat tggggacact 2640 caaaactgta tggaatgggg gacaccgggg acgcatttat atggtgtccc caaatggcat 2700 ttccgtagtt tcatggaaaa ttccaaaatt ttcccgctcc aaaaaagcgg ccatccgtat 2760 aatatt 2766 //