ID KC456161; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC KC456161; XX DT 03-MAR-2013 (Rel. 116, Created) DT 05-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato leaf curl Palampur virus isolate Punjab segment DNA A, complete DE sequence. XX KW . XX OS Tomato leaf curl Palampur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RX DOI; 10.1016/j.virusres.2013.03.011. RX PUBMED; 23578824. RA Kanakala S., Jyothsna P., Shukla R., Tiwari N., Veer B.S., Swarnalatha P., RA Krishnareddy M., Malathi V.G.; RT "Asymmetric synergism and heteroencapsidation between two bipartite RT begomoviruses, tomato leaf curl New Delhi virus and tomato leaf curl RT Palampur virus"; RL Virus Res. 174(1-2):126-136(2013). XX RN [2] RP 1-2756 RA Richa S., Swarnalatha P., Krishnareddy M., Veer B.S., Tiwari N., RA Kanakala S., Malathi V.G.; RT ; RL Submitted (04-JAN-2013) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, Pusa, RL New Delhi, Delhi 110012, India XX DR MD5; d6276dbd39af667bf94325d13b650bad. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Tomato leaf curl Palampur virus" FT /segment="DNA A" FT /host="tomato" FT /isolate="Punjab" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="leaves" FT /collected_by="Krishnareddy M" FT /collection_date="2010" FT /identified_by="V.G.Malathi" FT /db_xref="taxon:526476" FT CDS 120..467 FT /codon_start=1 FT /product="AV2" FT /note="pre-coat protein" FT /db_xref="GOA:M1RNP5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M1RNP5" FT /protein_id="AGG13393.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLKEIEKTYSPDTIGYDLVRDL FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP FT ETKVLPDVSKL" FT CDS 280..1050 FT /codon_start=1 FT /product="AV1" FT /note="Coat protein" FT /db_xref="GOA:M1R981" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M1R981" FT /protein_id="AGG13394.1" FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV FT NRPMNRKPRFYRMYRSSDVPMGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGERFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLKKWHSTVTGGTYASKEQALVKRFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHPSNPVYATLKIRIYFYDSVTN" FT CDS complement(310..828) FT /codon_start=1 FT /product="AC5" FT /note="unknown" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:M1R987" FT /protein_id="AGG13399.1" FT /translation="MPFFENLISITMHILHGCSARFVVKHIKNFAEILWRTRRSTITHQ FT EEHHTIRVVLGLDILIHPDLTQNVDGLHTKSLSDAMCETGSTGNVANTHDLTNMRDIVP FT GLKRLHLTWAFTAHGHVRASIHPVKPWFPVHGSVHPFPCLCGADNRDSCTDSIRAVEVQ FT TTACFRCGR" FT CDS complement(1047..1457) FT /codon_start=1 FT /product="AC3" FT /note="replication enhancer protein" FT /db_xref="GOA:M1R357" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M1R357" FT /protein_id="AGG13395.1" FT /translation="MITDSRTGEYITADRAESGVFIWDVPNPLYFKILKHDERPCLTNH FT DIITVQIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFRTQVLKYLDMLGVVGI FT NNVIRAAYHVLDNVLQRTVDVWTTYDVKLNTY" FT CDS complement(1177..1596) FT /codon_start=1 FT /product="AC2" FT /note="transcription activator protein" FT /db_xref="GOA:M1QEI6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M1QEI6" FT /protein_id="AGG13396.1" FT /translation="MQSSLHSKGHSIPVAKTSLPHKKKKNIRTRRVDLQCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQNFETRRETLPNEPRHYNSPNTVQPQP FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGP" FT CDS complement(1499..2602) FT /codon_start=1 FT /product="AC1" FT /note="Replication initiation protein" FT /db_xref="GOA:M1RNQ1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M1RNQ1" FT /protein_id="AGG13398.1" FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVAPSRSAHFHPNIQGAKSASDVKTYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVIKELAPKDYVLQFH FT NLMTNLDRIFPSRIEVYRSPFNVSSFDRVPPELVDWVSSNLRCSAARPFSAALPNRPIG FT LVLEGDSRTGKTMWARSLGPHNYLCGHLDLNPRVYSNDALYNVIDDVDPHYLKHFKEFM FT GAQRDWQSNTKYGKPMMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI FT TLEGPLYSGRENVAPTQKEEEHPHETS" FT CDS complement(2269..2445) FT /codon_start=1 FT /product="AC4" FT /note="PTGS" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M1RFN3" FT /protein_id="AGG13397.1" FT /translation="MGLRISMFSSNLKENSSAKITDSSTWLPQVGQHISIPTFRELNQR FT QMSKHTSTKTETF" XX SQ Sequence 2756 BP; 734 A; 591 C; 612 G; 819 T; 0 other; accgaatggc cgcggtgcct tttgtgtggg tccagaacca atgaaattcg agatacatgg 60 cttatttaat gcgtggggac caataaatag acttgctcac caagcttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttcctg aaagcgttca tggtcttagg tgcatgctag 180 ctgtaaaata tctcaaagag atagaaaaga cctattctcc ggacacaatc ggatacgatc 240 ttgttcgtga cctaatctct gtcgtccgtg ccagaaacta tggtgaagcg tccagcagat 300 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga cagcccgtat 360 gctgtccgtg cagctgtccc tattgtccgc gccacaaagg caagggaatg ggtgaacaga 420 cccatgaacc ggaaaccaag gttttaccgg atgtatcgaa gctctgacgt gcccatgggc 480 tgtgaaggcc catgtaaggt gcaatctttt gagtccaggc acgatgtctc gcatattggt 540 aaggtcatgt gtattagcga cgttacccgt ggaaccggtc tcacacatcg cgtcggagag 600 cgattttgtg tgaagtccgt ctacgttctg ggtaagatct ggatggatga gaatatcaag 660 accaagaacc acacgaatag tgtgatgttc ttcttggtgc gtgatcgtcg acctacgggt 720 gcgccacaag atttcggcga agtttttaat atgtttgaca acgaacctag cactgcaacc 780 gtgaagaata tgcatcgtga tcgatatcaa gttctcaaaa aatggcattc gactgtgacg 840 ggaggaacat acgcgtcgaa ggaacaagca ttagttaaac gttttattag agttaataat 900 tacgttgtat ataatcaaca agaggccggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcatccatca aatcctgtat atgctacttt aaaaatccgg 1020 atctattttt atgattcggt aacaaattaa tatgtattaa gttttacatc atatgttgtc 1080 catacatcaa ctgttctttg caatacattg tctaatacat gataagctgc tcttattaca 1140 ttattaattc caacaacacc taacatatcc aggtacttaa ggacctgggt tctgaaaact 1200 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt tagaaaacac 1260 ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact gtatttggac tgttataatg 1320 tcgtggttcg ttaggcaagg tctctcgtcg tgtttcaaaa ttttgaaata caggggattt 1380 ggaacgtccc agataaacac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcagatc 1500 aactcgtctc gtgcggatgt tcttcttctt tttgtgtggg agcgacgttt tcgcgaccgg 1560 aatagagtgg cccttcgagt gtaatgaaga ctgcattctt caatgcccac tgcttgagtg 1620 ctgcattctt ttcttcgtcc aagaattctt tatagctgct ttgtggtcct ttattgcaca 1680 agaagatagt gggaatgcct cctttaatca tcatcggctt tccgtatttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtataaa gcgtcgttac tgtaaaccct agggtttaga tccaagtgac 1860 cgcacaagta attgtggggt cccaaactac gcgcccacat tgttttgccc gtacgactat 1920 cgccctccaa tactaaccct atgggtctat ttgggagcgc agcggaaaaa ggccgcgcag 1980 cggaacacct caaatttgac gacacccaat cgacgagttc tggcggaact ctgtcgaagg 2040 acgaaacatt aaatggcgaa cgataaactt cgattcgtga agggaaaatc cgatctaaat 2100 tcgtcattaa attgtgaaac tgcaacacat aatcctttgg tgctaattcc tttatcacct 2160 ttaatgcgtc ttctttattt ccagtattaa ttgcttgtgc gtaagcatcg ttagctgttt 2220 gttgaccacc acgagcagat cgtccatcga tctggaaaac accccactct agaacgtctc 2280 cgtctttgtc gatgtatgtt ttgacatctg acgctgattt agctccctga atgttgggat 2340 ggaaatgtgc tgaccgactt ggggcaacca agtcgaagaa tctgttattt ttgcactgga 2400 attttccttc aaattggatg agaacatgga tatgcggaga cccatcttcg tgaagctctc 2460 tgcagatttt tatgaatttc tttgatgtag gggtttctag gttttgtaat tgggaaagtg 2520 cctcttcttt agttagagag cactttggat atgtaaggaa atagtttttt gcatttattc 2580 tgaaacgagt tggcggagcc ataaacctcg tatttccaac cggtgtctct caacttcttg 2640 tattatattg gtgtctgggg tcctatatat acataagacc ctaaatggca taattgtaat 2700 tttagtgata aatttacttt aattcaaact cctatagcgg ccattcgtat aatatt 2756 //