Dbfetch
ID KC441465; SV 1; circular; genomic DNA; STD; VRL; 2638 BP. XX AC KC441465; XX DT 15-APR-2013 (Rel. 116, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Squash leaf curl virus isolate PAL segment DNA-A AV1, AC3, AC2, AC1, and DE AC4 genes, complete cds. XX KW . XX OS Squash leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2638 RX DOI; 10.1007/s11262-013-1012-1. RX PUBMED; 24258392. RA Ali-Shtayeh M.S., Jamous R.M., Hussein E.Y., Mallah O.B., Abu-Zeitoun S.Y.; RT "Squash leaf curl virus (SLCV): a serious disease threatening cucurbits RT production in Palestine"; RL Virus Genes 48(2):320-328(2014). XX RN [2] RP 1-2638 RA Ali-Shtayeh M.S., Jamous R.M.; RT ; RL Submitted (05-JAN-2013) to the INSDC. RL Biodiversity and Biotechnology research Unit, Biodiversity & Environmental RL Research Center, BERC, Al-Masjed Str, Nablus 970, Palestinian Authority XX DR MD5; 1f91bf8fd92d99e55dde3148d71c98b4. XX CC GenBank Accession Numbers KC441465, KC441466 represent sequences CC from the 2 segments of Squash leaf curl virus isolate PAL. CC ##Assembly-Data-START## CC Assembly Method :: CLC Main Workbench 6 v. 6.6.2 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2638 FT /organism="Squash leaf curl virus" FT /segment="DNA-A" FT /host="squash" FT /isolate="PAL" FT /mol_type="genomic DNA" FT /collection_date="Sep-2010" FT /note="Palestine" FT /db_xref="taxon:10829" FT CDS 213..968 FT /codon_start=1 FT /product="AV1" FT /db_xref="GOA:M9T6X2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M9T6X2" FT /protein_id="AGI96968.1" FT /translation="MVKRDAPWRLMAGTSKVSRSANFSPRGGMGPRFNKAAAWVNRPMY FT RKPRIYRTMRGPDIPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATI FT KNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(965..1369) FT /codon_start=1 FT /product="AC3" FT /db_xref="GOA:M9T548" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M9T548" FT /protein_id="AGI96969.1" FT /translation="MVMDLRTWDDITVHQAENSVFIWEVPNPLYFKMYNVENPLYTHTR FT IYHIQIRFNHNLRRALNLHKAFLNFQVWTESIRASGTTYLNRFRHLVMLYLDRLGVIGL FT NNVIRAVSWATDRSYVNYVLENHEIKFNIY" FT CDS complement(1110..1505) FT /codon_start=1 FT /product="AC2" FT /db_xref="GOA:M9T136" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M9T136" FT /protein_id="AGI96970.1" FT /translation="MPNSSSSKVPSIKAQHRIAKKRAVRRRRIDLDCGCSIYIHINCAK FT DGNGFTHMGRHHCASGREFRFYLGGSKSPLFQDVQRGESTLHAHKDIPHSNPVQPQPEE FT STKSSQSVPELPSLDGIDSSFWDDIFE" FT CDS complement(1447..2493) FT /codon_start=1 FT /product="AC1" FT /db_xref="GOA:M9T1P1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M9T1P1" FT /protein_id="AGI96971.1" FT /translation="MPRNPNSFRLTARNIFLTYPRCDVPKEEVLEMLLHLSWSVVKPNY FT IRVAREEHSDGSPHLHCLIQLSGKSNIKDAGFFDLTHPRRSARFHPNIQAAKDTNAVKN FT YITKEGDYCESGQYKVSGGSKSTKDDVFPNAVNAGSAGEALEIIKAGDPKTFIVNYHNL FT LANVERLFQKPPEPWVPPFEISSFTSVPEELQYWADDYFNECSAARPRPTSIIIEGGSR FT TGKTMWARSLGPHNYLSGHLDFNSRVFSNDVKYNVIDDVAPHYLKLKHWKELIGAQRDW FT QSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENSALREWTEKNAKFIFLEGPL FT YQSTAQDC" FT CDS complement(2049..2426) FT /codon_start=1 FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:M9SZA4" FT /protein_id="AGI96972.1" FT /translation="MFPKKKFLRCFCISRGQSSNRITLESPERNIPTGLRTYTASFNYL FT ENPTSRMLDFSTSLTPDGLPDFTRTFRLPKTPTPSRTTSPKKVIIVNPGNIKCLGVQSR FT PKTTYFPTPSMQVVREKLSKL" XX SQ Sequence 2638 BP; 706 A; 578 C; 600 G; 754 T; 0 other; accggatggc cgcccgtttt tggtgtcctc tactttagcc cacggggcag gcccaggccc 60 aaatcaacca caaccttttt ttattttatg ggaccacatt aattattgca accaatcacg 120 ttgcgcctga cgagtctaca taataatgac ttggtgacta agtgtggtcc ctataaataa 180 agctgacata tcccatacct ctttaattca aaatggtaaa gagagatgcc ccatggcgtt 240 taatggcggg gacctcaaag gtctcacgct ctgctaactt ttcgcctcgt ggaggtatgg 300 gcccaagatt caacaaggcc gctgcatggg ttaacaggcc tatgtacagg aagcccagga 360 tctatcgcac aatgagaggc ccagacatcc ccaagggatg tgaagggcca tgcaaggttc 420 agtcttacga gcagcggcat gatatctccc atcttggcaa ggtaatgtgt atttcggacg 480 tgacgcgtgg taatggcatt actcaccgcg tcggcaagcg cttttgtgtt aagtctgtat 540 atattttagg caagatatgg atggacgaaa atatcaagtt gaagaatcac acgaacagtg 600 tgatattttg gttagttcga gatcgtagac catatggcac tccgatggat ttcggccagg 660 tgttcaacat gtttgacaac gagcccagca cggcaactat caagaacgat ctacgtgatc 720 gttatcaagt catgcacagg ttctacgcga aggtcactgg tggtcagtat gctagcaacg 780 aacaagcctt ggttaggcgt ttctggaagg tcaacaacca tgttgtgtat aatcaccagg 840 aagccgcgaa atacgagaat catacggaga acgctttgtt attgtatatg gcatgtactc 900 atgcctctaa ccctgtatat gcgacattga aaattcggat ctatttttat gattcgataa 960 caaattaata aatgttgaat tttatttcat gattctcgag tacataattt acatatgaac 1020 ggtctgttgc ccaagataca gctcgtataa cgttattgag accaataact cctaacctat 1080 ctaagtacaa cataactaag tgcctaaatc tattcaaata tgtcgtccca gaagctcgaa 1140 tcgattccgt ccagacttgg aagttcagga acgctttgtg aagatttagt gctctcctca 1200 ggttgtggtt gaaccggatt tgaatgtggt atatccttgt gtgcgtgtag agtggattct 1260 ccacgttgta catcttgaaa tagaggggat ttggaacctc ccaaataaaa acggaattct 1320 ctgcctgatg cacagtgatg tcgtcccatg tgcgtaaatc cattaccatc tttggcgcag 1380 tttatatgta tgtatatgga acagccacag tctaagtcga ttcttcgacg acgaacagct 1440 ctttttttag caatcctgtg ctgtgctttg atagagggga ccttcgagga agatgaattt 1500 ggcatttttt tcagtccact ctcgtagtgc cgagttctcg gctttgtcga ggaaatcttt 1560 ataactggac ccctctccag gattgcacag cacgattgat gggattccac ctttaatttg 1620 aaccggcttt ccatatttac agttggactg ccagtccctt tgggccccaa tcaattcctt 1680 ccagtgcttt agctttaggt aatgcggagc gacgtcatca atgacgttat acttgacgtc 1740 atttgagaaa accctagaat tgaaatcaag atggccgctc aagtaattat gtgggcctaa 1800 tgacctagcc cacattgtct tgcccgttct tgaaccacct tctatgatta tactagttgg 1860 ccttggccgc gcagcggaac actcattaaa ataatcatca gcccaatatt gtaactcttc 1920 tggaactgac gtgaacgaag agatctcaaa cggaggaacc catggttccg gaggtttctg 1980 aaataatctc tcgacgttag ctaataaatt atgataatta acgataaacg tctttggatc 2040 accagctttt ataatttcga gagcttctcc cgcactacct gcattgacgg cgttgggaaa 2100 tacgtcgtct ttggtcgact ttgaaccccc agacacttta tattgcccgg attcacaata 2160 atcaccttct ttggtgatgt agttcttgac ggcgttggtg tctttggcag cctgaatgtt 2220 cgggtgaaat cgggcagacc gtctggggtg agtgaggtcg aaaaatccag catccttgat 2280 gttggatttt ccagataatt gaatgaggca gtgtaagtgc ggagacccgt cggaatgttc 2340 ctctctggcg actctaatgt aattcggttt gacgactgac cacgagagat gcagaagcat 2400 ctcaagaact tcttctttgg gaacatcgca ccttggataa gttaagaata tatttctggc 2460 agttaaacga aaggaattag ggtttcgtgg catatttcgt aaatatggat cgggacacca 2520 ggaggtgtcc tctcaacttt ctcatattgc tggtgtcctg gtgtcctata tatacctcaa 2580 gacacataaa gcctctaggg gacaccaagg ggcaaaatcg gccatccgca ataatatt 2638 //