Dbfetch
ID KC433318; SV 1; linear; genomic RNA; STD; VRL; 2606 BP. XX AC KC433318; XX DT 07-APR-2013 (Rel. 116, Created) DT 07-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Blueberry necrotic ring blotch virus segment RNA3, complete sequence. XX KW . XX OS Blueberry necrotic ring blotch virus OC Viruses; Riboviria; Kitaviridae; Blunervirus. XX RN [1] RP 1-2606 RX DOI; 10.1007/s00705-013-1653-3. RX PUBMED; 23649174. RA Cantu-Iris M., Harmon P.F., Londono A., Polston J.E.; RT "A variant of blueberry necrotic ring blotch virus associated with red RT lesions in blueberry"; RL Arch. Virol. 158(10):2197-2200(2013). XX RN [2] RP 1-2606 RA Cantu-Iris M., Harmon P.F., Londono A., Polston J.E.; RT ; RL Submitted (02-JAN-2013) to the INSDC. RL Plant Pathology, University of Florida, 1453 Fifield Hall Hull Rd, RL Gainesville, FL 32611, USA XX DR MD5; 219590903195e80f41589f7208873a5e. XX CC GenBank Accession Numbers KC433316-KC433319 represent sequences CC from the 4 segments of Blueberry necrotic ring blotch virus isolate CC BNRBV-RL. CC ##Assembly-Data-START## CC Assembly Method :: Sequencher v. 5.8 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2606 FT /organism="Blueberry necrotic ring blotch virus" FT /segment="RNA3" FT /host="Vaccinium corymbosum cv. Abundance" FT /isolate="BNRBV-RL" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Mar-2011" FT /db_xref="taxon:1094249" FT CDS 50..220 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:M4YCA3" FT /protein_id="AGI44299.1" FT /translation="MAYVDRVVVTTVTPCASVYRTVHSVHVNSVVSSDDTRVGDIFPSP FT ERYTRYTISKC" FT CDS 417..1226 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="GOA:M4YCR4" FT /db_xref="UniProtKB/TrEMBL:M4YCR4" FT /protein_id="AGI44300.1" FT /translation="MDLNTVINCILLTSSFFSPVEVRKCAEFALESKRVSHHFFRNNLY FT LYKPKLPRLLSDDYTPYCRVCARKISDYEYDEDVLILPLGNLCRNCKSIPPSDDTFGPF FT GPVYNFSSVVPTPSQHCPASSEVYNITSDGSYILLHRNTAFSKEFRYTISKCHDPYILL FT HITELGFVDEVLDRITGSIGTLFRTIVTELTHIFGGPIHAVLVTIPHAFLSLVHHISSV FT IEYLLFDVGLANALLITIVFWFKFPWMQAALCALLVIYVTKLNVLFH" FT CDS 1245..1853 FT /codon_start=1 FT /product="p24" FT /db_xref="GOA:M4YSN2" FT /db_xref="InterPro:IPR032441" FT /db_xref="UniProtKB/TrEMBL:M4YSN2" FT /protein_id="AGI44301.1" FT /translation="MSSRGKYVRSPTPISRVRPVRRMPLSPNSHVSVGTDVYDTFLRSF FT SNPSFLLSCVISGLVVLTHVENIHDGPFGPYLQEHSQNAYVYWVVQNVPKVLGLLTFIP FT VAMTAPRRLTTFVVILAVVSVIVLPPFPVLVYLGASACMHIYLHARLSTTRLFVVALSG FT VVVYYGYKNRDTFVLELPTGSGSDTFSRIVYSAKGTTKN" FT CDS 1667..2461 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:M4YEE4" FT /protein_id="AGI44302.1" FT /translation="MHAYISTRTFKYYQIIRRSPLWCGRVLWVQKQRYICFGTPHRLRF FT GHFLTHSLLCEGHHQKLNDFGIYKMTVQADLVKYIALQLVVLSGVLWQQSADTGIELGP FT RPKFIPPVTMPANYAELISNLESVFHVAEGHPELVPQYIPQPLPQPPIAPVPPVVPPAA FT PSTVAPAHSGHPAPAVANPAHAPTHTAPALSRGKRDVSRIVAGVADSVGDVLRPAANLL FT PGADLVVSAADAIECIASIEDCEGHRELVPCNLCDPEDALVQ" XX SQ Sequence 2606 BP; 583 A; 644 C; 536 G; 843 T; 0 other; gacaaatgtc aaattaatct ttgggctcgt cccgcttgac tgccatttaa tggcctacgt 60 tgaccgtgta gttgtcacaa cggttacgcc ttgtgcgtcc gtctaccgaa cggtacactc 120 ggtacacgtt aacagcgtgg tatcttcaga cgacactcgc gttggagata ttttcccgtc 180 acccgaacgg tatactcggt acactattag caagtgctag gtggtgacga atttattcgt 240 catactatcc ggtttactat ttctttacaa taaatgatcc acattccgac ctgagtgtgg 300 gtcttcaggt gtgattgtca attgtctagt tctagtcgta cgttaggtac ggtaaactaa 360 gagtccttct taaattacct ttaccacacc taacagtatt aaataaacta atcactatgg 420 acttaaatac tgttatcaat tgtatcttgc tgacgtcgag ctttttctca ccggttgaag 480 tacgcaagtg cgctgaattt gccctcgaat ccaagagggt ttcccatcat ttctttcgca 540 ataatctata tctgtacaaa ccaaagttac ctcggttgtt gtcagatgat tatactcctt 600 attgcagagt ttgcgcacga aaaatcagtg actacgagta cgacgaagat gtgttgatat 660 tacctttggg taatctctgt cgtaattgca aatccatacc acccagcgat gatacctttg 720 gtccctttgg tccagtctat aatttttctt ctgttgtccc cacaccttcg caacattgtc 780 ctgcttctag tgaagtttat aacattactt cggacggttc ctacatttta ctacaccgta 840 acacagcgtt ttcaaaggag tttagataca ccattagcaa gtgccacgac ccttatattc 900 tgttacatat tactgaattg ggttttgtcg atgaagtttt ggacagaatt actggttcca 960 ttggcacgct ttttcgaact atcgtcacag agttaactca tatatttggt ggaccgattc 1020 atgcggtgtt ggttactata cctcacgctt tcctttcact agtccaccac atttcatccg 1080 tcattgagta cctcctgttt gacgtcggtc tagctaatgc tcttttgatc acaattgtgt 1140 tttggtttaa atttccttgg atgcaagcag cattgtgcgc cctgttggtc atctacgtga 1200 ccaaactaaa cgttcttttc cattaaccga tcttctgaag caccatgtca agccgtggta 1260 agtacgttcg ttcacccact cctatctctc gggttcgtcc cgttagacgc atgcctctgt 1320 cacctaattc acatgtgagt gtgggaactg atgtctacga tacttttcta cgtagctttt 1380 ctaacccatc tttcttgttg tcatgcgtga tttcagggtt ggttgtgctc actcatgtcg 1440 agaacattca cgatggacct tttggtcctt atctgcagga gcattcgcag aacgcttatg 1500 tttactgggt tgttcaaaat gttcctaagg tcctcggcct tcttactttt ataccggtgg 1560 ctatgaccgc tcctcgaaga ttgactacat ttgtggtcat tcttgctgtc gttagtgtca 1620 tagtacttcc accgttcccg gtattggtct atcttggtgc ctctgcatgc atgcatatat 1680 atctacacgc acgtttaagt actaccagat tattcgtcgt agccctctct ggtgtggtcg 1740 tgtattatgg gtacaaaaac agagatacat ttgttttgga actccccacc ggctcaggtt 1800 cggacacttt ctcacgcata gtctactctg cgaagggcac caccaaaaac taaacgattt 1860 cggtatatac aaaatgactg ttcaggctga cttagtgaag tacattgcac tccaactggt 1920 ggtgttatcc ggtgttttgt ggcagcagtc tgctgacacg ggtatagaat tgggtcctag 1980 acctaagttc atccctcctg tcacgatgcc tgccaactac gccgagctca tctctaattt 2040 agagtctgtg ttccatgtag ctgaaggtca ccctgaattg gttccgcagt acataccgca 2100 acccctaccg cagcctccta tagctccagt tccacctgtt gttccgcccg ccgccccatc 2160 aacagtcgct ccagctcact ctggtcatcc ggcacccgcg gtagcaaatc ccgctcacgc 2220 tcccactcac accgcccctg ctctgtccag aggtaaacgt gatgtgtctc gaatcgtggc 2280 tggtgttgct gattccgtcg gtgacgttct tagacccgct gccaacttgt tgcctggtgc 2340 agacttagtt gttagtgcgg ccgacgccat cgaatgtatc gcctcaatcg aagactgcga 2400 gggtcaccgt gaattggtcc cttgcaattt atgtgaccca gaggatgctc tggtacaata 2460 acacctcttt acttttacgt gtagactagt aaggtagtat ttcttttctt tcgtcatttt 2520 actcggagtg acgtagtgtt tagtttagtt actttattag tttggtgttt catgcgtttt 2580 acacgaacgt attatttcat tatccg 2606 //