ID KC433317; SV 1; linear; genomic RNA; STD; VRL; 3939 BP. XX AC KC433317; XX DT 07-APR-2013 (Rel. 116, Created) DT 07-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Blueberry necrotic ring blotch virus segment RNA2, complete sequence. XX KW . XX OS Blueberry necrotic ring blotch virus OC Viruses; Riboviria; Kitaviridae; Blunervirus. XX RN [1] RP 1-3939 RX DOI; 10.1007/s00705-013-1653-3. RX PUBMED; 23649174. RA Cantu-Iris M., Harmon P.F., Londono A., Polston J.E.; RT "A variant of blueberry necrotic ring blotch virus associated with red RT lesions in blueberry"; RL Arch. Virol. 158(10):2197-2200(2013). XX RN [2] RP 1-3939 RA Cantu-Iris M., Harmon P.F., Londono A., Polston J.E.; RT ; RL Submitted (02-JAN-2013) to the INSDC. RL Plant Pathology, University of Florida, 1453 Fifield Hall Hull Rd, RL Gainesville, FL 32611, USA XX DR MD5; 3ebbc0434c8b9a45e1048dfefb72677e. XX CC GenBank Accession Numbers KC433316-KC433319 represent sequences CC from the 4 segments of Blueberry necrotic ring blotch virus isolate CC BNRBV-RL. CC ##Assembly-Data-START## CC Assembly Method :: Sequencher v. 5.8 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3939 FT /organism="Blueberry necrotic ring blotch virus" FT /segment="RNA2" FT /host="Vaccinium corymbosum cv. Abundance" FT /isolate="BNRBV-RL" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Mar-2011" FT /db_xref="taxon:1094249" FT CDS 346..3783 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="helicase-RdRP" FT /db_xref="GOA:M4YFU0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M4YFU0" FT /protein_id="AGI44298.1" FT /translation="MSSSKPSTTGLMPLLANLTAWEKLFVPVFLSSAECMNDSYVKSLP FT DILRVERAYGIVSPIELEDHNHQQIRVAKRFEIYQALKGGKALKSYGDIDVSKYMKITD FT FQVEDTVIVSPEDAFSWREESKCNIIKRHEKLDKFKVLTDYLHECATVVEQSLKDKILF FT LVKDGVKIQGTGCELYESSIAYDFDQNKFVLPRTVDPLTAKNILVTAAMKNLIEERILS FT HANLHIPKCELLISHGSAGSGKTNRLVQLATKLDPALVGIVTHSGYNRDHIKGLLRKRG FT LTSFRVETYDHFVRNPSHFDVLLMDECHLVHPGMLLTTMCLVKPQFAHGFADLSQCVYP FT LYPGSTRLPLYRIFRVCEFINQSSTIPKCVMGKLGLHYNLHLRYHELVSTSQIVGSVVH FT HPVDSFNLVPLTPGTVVYCSDRGSDQKKILDIGSRKVKHLCLYLRNEIPLVELMYALTR FT FTESLTVYSAVDGDAHNFIKDVQCIDPDLSGGATIVYSEDEYLYDQPREFMPIVTVPRV FT QNMQLPEHWKGKNTLSIERADVRFPIVRAGKNAKLLLPHHLKINYAALVDVLSIAPVKD FT RGVFYKEDDFPQLMSFILNRAINKYYPIGIRQVAGVRNYATKEMAEVLIETPLEPVLEM FT ERVYGNGIVVDVPTSDITVEEPDELISPVQEFLNHYFTPNVNYIDKSTFAFDFHRGEFQ FT FPVDGVTYNNSVEPFRERKFDCLTPVLYSPCPLNQVSTPRHVLNSILKRNANVPRLTSL FT EDIAGQAEILVDRLFAICPGVDTSSLSVTVESIADWMKTQPDSVMGRLTDGNPLHCKPL FT DRYQFLLKSEPKPDLTVEALSKYPIPQSILCHSKDINAIFFVHSFRTIRDRIMEKMDKK FT YQFFTKVDEEGFAEKMNRVFPANSAKFYYSYEFDMSKYDKSQGQLVLDFECALMRRLGV FT PEYIVGCWRVAHTRTRARDLTNKISFETVFQRKSGDASTYFGNTVILMIALLDVLPDED FT VVFGAFSGDDSLIFSTRPPDKIDFKILSTRYNFEVKLFDFQYHYFCSKFVLNVNGRWVV FT TPDPLKRAVKLGRADLRNFEHVEEYRVSFIDNVKTYNNSAVVEKLSLAVMERYGSYYNP FT SLAIQCMYHLGKKKNFSSLFYHAAGDILCYDPSRPRLD" XX SQ Sequence 3939 BP; 1024 A; 780 C; 826 G; 1309 T; 0 other; gacaaattgt cactactact acgcgactca cattgcgtgt tcactaccta caacattaag 60 ttgtgtccgg cccctactgg ccattactac agaatttaag ttctttgaac ttaaattcat 120 tcactacgaa cttcggttca ttcactactg aacttcggtt caatcactac ggaatttcgg 180 ttccatcact atcgtataca ggttcattct ttgtttgagc ctcggttctc gtttccttta 240 acgtgcttaa ctgtcgttat atgtgcggga atcttactat atttttcata attctactta 300 ctttatctct cgtggtactt tttgtttata caacttgtta ctacgatgtc ttcttccaag 360 ccttccacaa cgggtcttat gcctcttctg gcaaacttga ctgcttggga gaaattattc 420 gttcccgtgt ttctaagctc cgcggaatgt atgaatgact cttatgttaa atcattacct 480 gatattttga gagtcgaaag agcttatggg attgtatcac caatcgaatt agaagaccat 540 aatcaccaac agatccgtgt ggcaaaaaga tttgaaatct atcaggctct gaagggtggt 600 aaggctctta agtcgtatgg tgatatcgac gtgtccaaat atatgaagat tactgatttt 660 caagttgagg acactgtaat tgtgagccct gaagatgcat tctcgtggcg tgaagaatcc 720 aaatgtaaca tcattaaacg tcacgagaaa cttgacaaat tcaaggttct cacagattat 780 ttgcacgagt gcgcgacagt cgttgagcaa agtcttaagg ataagatttt gtttttggtc 840 aaagacggtg taaaaatcca gggaactggt tgtgagcttt atgaaagtag tattgcttac 900 gactttgatc agaacaaatt tgtactccca cgtactgtcg atccacttac tgcaaagaat 960 attcttgtta ctgcggctat gaagaatctg atagaagagc gcatactctc ccacgctaat 1020 cttcacattc caaagtgtga attattgatt tcgcatggaa gcgcaggttc gggaaaaaca 1080 aatcgtctag ttcaattggc taccaaactg gacccagctt tggttggtat agtaactcat 1140 tcaggataca accgagatca tattaagggg ctcctgcgca agcgtggttt gacctctttc 1200 cgggttgaga cttatgatca tttcgtccgg aacccgtctc attttgatgt tttgctgatg 1260 gacgaatgtc acctggtcca ccctggaatg ttgttgacca ccatgtgttt ggtgaaacct 1320 caatttgcac acggttttgc tgatctgtca cagtgtgttt acccactata tccgggatca 1380 acgcggttgc ctttgtatcg tattttccga gtctgcgagt tcatcaatca gagtagcaca 1440 attccaaaat gtgtcatggg taaactcggt ttgcactaca atctacatct tcggtatcac 1500 gaattggtta gcacctctca aattgttgga tccgttgtcc accatccggt cgattcattt 1560 aacctggttc ctctgactcc aggcactgtt gtttattgct ccgaccgtgg ttcggatcag 1620 aaaaagatcc ttgatatcgg ttcacggaaa gttaagcatc tgtgcttgta tttgagaaat 1680 gagatcccac ttgtcgagtt aatgtacgca ttgacgagat tcactgaatc ccttacagtt 1740 tattcagctg tcgatggtga tgctcataac tttataaaag atgtgcaatg catagatccc 1800 gatttgtcgg gtggtgcgac tattgtttat tccgaagatg agtatcttta tgatcaacca 1860 cgagagttta tgcctatagt gaccgttcct cgggtgcaaa atatgcagct tcctgaacat 1920 tggaaaggga aaaatacttt gtctattgag cgtgctgatg tgcggtttcc tattgttcgt 1980 gccggtaaga atgccaaact gcttcttcct catcatttaa aaatcaatta tgcagctttg 2040 gtcgatgtgc tgtccattgc tcctgttaaa gaccggggtg tgttctataa ggaagacgat 2100 tttcctcaac tgatgtcttt tatccttaat cgtgctatca acaagtatta tcctattggt 2160 ataagacaag ttgcaggtgt tcgtaactat gctaccaagg aaatggcaga agttttaatt 2220 gaaactcctt tggaaccggt cttggaaatg gagcgagttt acggtaatgg tatagtcgtg 2280 gacgttccca cttcggacat tactgttgaa gaaccggacg agttaatatc cccagtacaa 2340 gaattcctaa atcattattt cactcctaat gtcaattaca ttgataagtc cactttcgcc 2400 tttgatttcc atcgtgggga gtttcaattt cccgtagatg gtgtcactta taacaattca 2460 gtagaaccat ttagggagcg aaaatttgat tgtctcactc cggtgttgta ttcaccgtgt 2520 cctttgaatc aggtttcgac acctcgacat gtgcttaatt ctatattgaa gcgcaacgca 2580 aatgtacctc gcttaacttc tcttgaagat atagcgggtc aagctgaaat tctggtcgac 2640 agattatttg ctatatgtcc tggtgtagat acgtcctctt tatctgtgac agtagagtcg 2700 attgccgatt ggatgaagac tcaacctgat tctgtgatgg gtcgattgac ggatggtaac 2760 cctttgcact gcaaaccgtt ggatcgttac cagtttttac tgaagagcga accaaaacct 2820 gacttgacgg tcgaagcttt gtccaaatac cctatacctc aatccatatt gtgtcattct 2880 aaagacataa atgctatttt ttttgtccac tcatttcgca ctattcgaga tagaattatg 2940 gagaagatgg ataagaaata tcaatttttc actaaagtgg atgaggaagg gtttgctgag 3000 aaaatgaacc gtgtttttcc cgctaattct gcaaagttct attactctta tgagtttgat 3060 atgtccaagt atgacaagtc tcaaggacag ttggtgcttg attttgagtg cgcgttgatg 3120 cggcgtttag gtgttcctga atacattgtc ggatgttggc gcgtcgcaca tacccgcact 3180 cgcgcaaggg atcttaccaa caagatatcc tttgagacag tatttcaaag aaaatcgggt 3240 gatgcatcca catattttgg taatactgtt atactaatga ttgcgttgct agacgtttta 3300 ccagatgagg atgtagtctt tggtgcgttt tcaggtgacg actctttgat cttttcgact 3360 agacctcctg ataaaattga tttcaaaatt ttatcgactc ggtataattt cgaagtgaag 3420 ttgtttgact ttcagtatca ctacttctgt tcgaaatttg ttcttaatgt gaatggtcgc 3480 tgggttgtta ctcctgatcc actgaagcgt gcagttaaac tcgggcgcgc tgacttacgg 3540 aactttgaac atgtggaaga gtacagggtt tcttttattg ataatgtgaa gacatataat 3600 aactcagctg tggttgagaa actgtctttg gctgtcatgg agagatatgg ttcttattat 3660 aatccttctc ttgcgattca gtgtatgtat catttgggga agaagaaaaa tttttcttct 3720 ttgttttatc atgctgcggg tgacatcttg tgttacgacc cgtcaagacc tagactagat 3780 tagtctatcg ctgattacac cgggttttca gctaaatcta tcctataaat atgggttttt 3840 cccggttttc ccaaataaat aattcttcat tattcggtat gtcgtaagtt tagtttaatt 3900 atattatttt tggtccatct tcttgtttct ttataatcg 3939 //