ID   KC426927; SV 1; circular; genomic DNA; STD; VRL; 2624 BP.
XX
AC   KC426927;
XX
DT   08-MAY-2013 (Rel. 116, Created)
DT   27-APR-2025 (Rel. 144, Last updated, Version 2)
XX
DE   Capraria yellow spot Yucatan virus segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Capraria yellow spot virus
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2624
RA   Torres-Herrera I., Cardenas-Conejo Y., Ambriz-Granados S.,
RA   Mauricio-Castillo J.A., Moreno-Valenzuela O., Arguello-Astorga G.R.;
RT   "New SLCV clade begomoviruses isolated from weeds in Yucatan, Mexico";
RL   Unpublished.
XX
RN   [2]
RP   1-2624
RA   Torres-Herrera I., Cardenas-Conejo Y., Ambriz-Granados S.,
RA   Mauricio-Castillo J.A., Moreno-Valenzuela O., Arguello-Astorga G.R.;
RT   ;
RL   Submitted (28-DEC-2012) to the INSDC.
RL   Division de Biologia Molecular, Instituto Potosino de Investigacion
RL   Cientifica y Tecnologica (IPICYT), Camino a la Presa San Jose 2055. Col.
RL   Lomas 4 seccion, San Luis Potosi 78216, Mexico
XX
DR   MD5; 048a66c9e5923a8d411bb8091f496c9c.
XX
CC   GenBank Accession Numbers KC426927, KC426928 represent sequences
CC   from the 2 segments of Capraria yellow spot Yucatan virus.
CC   
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAStar v. edit seq, MegAlign
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2624
FT                   /organism="Capraria yellow spot virus"
FT                   /segment="DNA-A"
FT                   /host="Capraria biflora"
FT                   /mol_type="genomic DNA"
FT                   /geo_loc_name="Mexico: Yucatan, Conkal"
FT                   /collection_date="2007"
FT                   /note="submitted name=Capraria yellow spot Yucatan virus"
FT                   /db_xref="taxon:2049955"
FT   gene            202..957
FT                   /gene="AV1"
FT   CDS             202..957
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="capsid protein"
FT                   /function="encapsulates the viral genome"
FT                   /note="CP"
FT                   /protein_id="AGK90269.1"
FT                   /translation="MPKRDAPWRLMAGTSKASRSANYTPRGVVGPKIDKAAAWVNRPMY
FT                   RKPRIYRTLRSPDVPRGCEGPCKVQSFEQRHDISHVGKVLCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   gene            complement(954..1352)
FT                   /gene="AC3"
FT   CDS             complement(954..1352)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="rep-interacting protein"
FT                   /function="enhances function of Rep protein"
FT                   /note="REn; AL3"
FT                   /protein_id="AGK90270.1"
FT                   /translation="MDSRTGESITADHAESSVFTWEGSNSLFSRIRFVENPMFTRTRIY
FT                   HIEVRFNHNVRRALGLHKAYFNFQIWTTSMTASGRTYLSRFKFLVMSYLDSLGAIGINN
FT                   VIRAVRFATDRHYVTDVLENHEIKYKFY"
FT   gene            complement(1099..1488)
FT                   /gene="AC2"
FT   CDS             complement(1099..1488)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator"
FT                   /function="activation of late genes"
FT                   /note="TraP; AL2; silencing-suppressor"
FT                   /protein_id="AGK90271.1"
FT                   /translation="MQNSSSSTPPSIKAQHRIAKKRAVRRRRIDLNCGCTIYLHINCAD
FT                   NGFTHRGEHHCGSCREFRFYLGGFQFPLFKDTVRREPHVHENKNIPHRSPVQPQREESV
FT                   GSPQSVLQLPNLDDFDDSFWTDIFK"
FT   gene            complement(1430..2479)
FT                   /gene="AC1"
FT   CDS             complement(1430..2479)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="rolling-circle initiation protein"
FT                   /note="Rep"
FT                   /protein_id="AGK90272.1"
FT                   /translation="MPRNPNSFRLQANNIFLTYAQCDIPKDEALQMLQSLHWAIVKPLY
FT                   IRVSREEHSDGFPHLHCLLQLSGKSNIKDAGFFDLTHPRRSARFHPNIQAAKDTNAVRN
FT                   YITKEGDYCESGQYKVSGGSKANKDDVYHNVVNAASAGEALELIRAGDPKSFIVNYHNL
FT                   VPNLDRLFQKAPEPWVPPFRLSSFTNVPDEMQEWADEYFGRGSAARPIRAISIIVEGDS
FT                   RTGKTMWARALGRHNYLSGHLDFNSRVYSNDVEYNVIDDVAPHYLKLKHWKELIGAQMN
FT                   WQTNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKKENTSPRNWTLKNAKFIFLNAP
FT                   LYQSTAQDC"
FT   gene            complement(2071..2424)
FT                   /gene="AC4"
FT   CDS             complement(2071..2424)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /protein_id="AGK90273.1"
FT                   /translation="MPSVIYPRMKLFRCFNLCTGQSSSPYTYESQERNIQTGSPIYTVS
FT                   SNSPASPTSRMLDFSTLLTPEGLPVFTQISKLPKTPTPSEITSPKRVIIVNPGSIRCLG
FT                   VPKPIRTTSTTTS"
XX
SQ   Sequence 2624 BP; 651 A; 582 C; 633 G; 758 T; 0 other;
     accggatggc cgcgattttt tggagtcctg tccgtaccca cttgctctcg ctttattttc        60
     atcctgggcc cacagataag atgaaaatct cacggaccaa tgacatgcct cctgtggagc       120
     ctagttatct attacttgct gactaagtgt ggtccctgcc tattaaagca ctgacagttt       180
     catcttttgc tttaattcga aatgcctaag cgcgatgccc catggcgctt aatggcgggg       240
     acctctaagg cgtcccgctc tgccaactat acgcctcgtg gagttgttgg gcctaaaatt       300
     gataaggccg ctgcttgggt taacaggccc atgtacagaa agcccaggat atatcggact       360
     ttgagaagcc cagatgttcc cagagggtgt gaagggcctt gtaaggtcca gtccttcgag       420
     cagcggcatg atatatctca tgttggcaag gtgctgtgca tttctgacgt gacacgaggc       480
     aatggcatta cccatcgtgt tggtaagcgt ttctgcgtca agtctgtgta catattgggc       540
     aagatatgga tggacgagaa tatcaagttg aagaaccaca ccaacagcgt catgttctgg       600
     ttggtccgtg accgtagacc ctacggcacc cccatggatt ttggccaggt gttcaacatg       660
     ttcgacaacg aacccagtac tgccactgtg aagaacgatc ttcgtgatcg ttttcaggtc       720
     atgcacaagt tctatgctaa ggtgactggt ggacagtacg cgagcaatga gcaggcgttg       780
     gtcaaacggt tctggaaggt gaacaactac gtcgtctaca accatcaaga ggcagggaaa       840
     tacgagaatc atacggagaa tgctttgtta ttgtacatgg catgtactca tgcctctaat       900
     cctgtatatg cgacattgaa aattcggatc tatttttatg attcgataac aaattaataa       960
     aatttgtatt ttatttcatg attctcgagt acatctgtta cataatgtct gtctgttgcg      1020
     aaacgaacag ctcggattac attgtttatt ccaatagctc ctaagctatc taagtaagac      1080
     attacaagaa atttgaatct acttaaatat gtccgtccag aagctgtcat cgaagtcgtc      1140
     cagatttgga agttgaagta cgctttgtgg agacccaacg ctctcctcac gttgtggttg      1200
     aaccggactt cgatgtggta tattcttgtt ctcgtgaaca tggggttctc tacgaaccgt      1260
     atccttgaaa agagggaatt ggaaccctcc caggtaaaaa cggaactctc tgcatgatcc      1320
     gcagtgatgc tctccccggt gcgtgaatcc attgtctgcg cagttgatgt ggaggtatat      1380
     ggtacatcca cagttcaaat ctatgcgtct tcgacgaaca gcccttttct tagcaatcct      1440
     gtgctgtgct ttgatagagg ggggcgttga ggaagatgaa ttttgcattt tttaatgtcc      1500
     agttcctcgg tgatgtattt tcctttttat cgaggaaatc tttatagctg gccccctctc      1560
     ctggattgca cagcacgatt gatggtatgc cacctttaat ttgaactggt tttccgtatt      1620
     tgcaatttgt ttgccagttc atctgggccc caatcaactc tttccagtgc tttagcttta      1680
     ggtagtgcgg agctacgtca tcaatgacgt tatactccac atcatttgaa tagaccctag      1740
     aattgaagtc taggtgacca ctcaagtaat tatgcctacc tagagcacga gcccacatcg      1800
     tcttgccagt cctcgaatca ccttcgacga tgatactaat agctctaatt ggccgcgcag      1860
     cggaacctct tccaaaatac tcatcagccc actcttgcat ctcgtctggc acgttagtga      1920
     aggaagagag tcggaacgga ggaacccatg gttccggagc cttttgaaag aggcgatcga      1980
     ggttaggcac taagttatgg tagttaacaa tgaacgattt tggatctccg gctcttataa      2040
     gctcgagagc ctctccagca cttgctgcat ttacgacgtt gtggtagacg tcgtccttat      2100
     tggctttgga acccccagac accttatact gcccggattc acaataatca ccctctttgg      2160
     tgatgtaatt tctgacggcg ttggtgtctt tggcagcttg gatatttggg tgaaaacggg      2220
     cagaccttct ggggtgagta aggtcgaaaa atccagcatc cttgatgttg gacttgccgg      2280
     agagttggag gagacagtgt aaatggggga acccgtctga atgttcctct cttgagactc      2340
     gtatgtataa gggcttgacg attgcccagt gcagagattg aagcatctga agagcttcat      2400
     ccttgggtat atcacactgg gcatatgtta ggaagatatt attggcttga agacggaagg      2460
     aattagggtt tctaggcatt attgtttggg actctaagct gggactccag ggatggctat      2520
     ctcaaaaacc tattgtttgt ggagtcctgg agtcctatat atacataaag cctctaggac      2580
     tctaagtaca cgtgggatca ctttcggcca tccgatataa tatt                       2624
//