ID KC424490; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC KC424490; XX DT 02-APR-2013 (Rel. 116, Created) DT 02-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Sri Lankan cassava mosaic virus-India[Attur:2009] segment DNA-A, complete DE sequence. XX KW . XX OS Sri Lankan cassava mosaic virus-India[Attur:2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2758 RA Kushawaha A.K., Dasgupta I.; RT "Sequence analysis and phylogenetic relationship of DNA-A of a begomovirus RT associated with the mosaic disease of cassava in India"; RL Unpublished. XX RN [2] RP 1-2758 RA Kushawaha A.K., Dasgupta I.; RT ; RL Submitted (29-DEC-2012) to the INSDC. RL Department of Plant Molecular Biology, University of Delhi South Campus, RL Benito Juarez Road, New Delhi, Delhi 110021, India XX DR MD5; b3399f79743951e91fa138fb730f71ca. DR EuropePMC; PMC5877859; 29607360. XX CC ##Assembly-Data-START## CC Assembly Method :: Gene Runner v. 3.05 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Sri Lankan cassava mosaic FT virus-India[Attur:2009]" FT /segment="DNA-A" FT /host="Manihot esculenta" FT /isolate="Attur" FT /mol_type="genomic DNA" FT /country="India:Tamil Nadu, Attur" FT /collected_by="Indranil Dasgupta" FT /collection_date="09-Oct-2009" FT /identified_by="Akhilesh Kumar Kushawaha and Indranil FT Dasgupta" FT /db_xref="taxon:1310383" FT /altitude="212m" FT gene 137..493 FT /gene="AV2" FT CDS 137..493 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /note="AV2 protein" FT /db_xref="GOA:M4WKC3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4WKC3" FT /protein_id="AGI16833.1" FT /translation="MWDPLVNEFPESVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKKYVEATSRYHHFNSRLEGSSPSELRQPIQQSCCCPHCPRHKKTSLDKQAHES FT EAQVVQDVQKPRCS" FT gene 297..1067 FT /gene="AV1" FT CDS 297..1067 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /note="coat protein CP" FT /db_xref="GOA:M4WIV3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4WIV3" FT /protein_id="AGI16832.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1064..1468) FT /gene="AC3" FT CDS complement(1064..1468) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:M4X0D2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4X0D2" FT /protein_id="AGI16836.1" FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFKIIQHDSRPFNRPWDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDRLGIICINT FT VVNAVEHVLYNVIAGTDSIEQSNLIKFNVY" FT gene complement(1209..1616) FT /gene="AC2" FT CDS complement(1209..1616) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="TrAP" FT /db_xref="GOA:M4WH58" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4WH58" FT /protein_id="AGI16835.1" FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGNEWRIYLGGSKSPLFQNHPARQPAVQQAVGHNNHPDTLQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT gene complement(1546..2601) FT /gene="AC1" FT CDS complement(1546..2601) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /note="replication associated protein Rep" FT /db_xref="GOA:M4WGF9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4WGF9" FT /protein_id="AGI16834.1" FT /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI FT CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID FT KDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN FT LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKAWALKNATFISLSEPLY FT SGSNQGPTQGS" FT gene complement(2145..2447) FT /gene="AC4" FT CDS complement(2145..2447) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4WIV7" FT /protein_id="AGI16837.1" FT /translation="MGNLTSMLCFSSKGSSQSQTIGNSIVYTQAVAPVSTPTYRALSPA FT QTSSPTSIRMETPSTGVSFRSMEDLQEEDSNQQTTLTPQHLTQAVSQRLLESLRS" XX SQ Sequence 2758 BP; 696 A; 607 C; 655 G; 800 T; 0 other; accggatggc cgcgcccccc gctttgtggt ggaccccccc ccacgtggag atgtccccca 60 ctcagaacgc tccctcaaag cctgtatagt tgtggtccct ctttaagtac ttgctcagca 120 agttgtaatc tgcacaatgt gggacccttt ggtaaacgag ttccctgaat cagttcacgg 180 tttccggtgt atgcttgccg tgaaatatct tcagctagtt gaaggtactt attcccccga 240 tacactcggt tacgatttaa tcagagattt gatctctgtc atcagggcca aaaaatatgt 300 cgaagcgacc agcagatatc atcatttcaa ctcccgcctc gaaggttcgt cgccgtctga 360 acttcgacag cccatacagc agtcgtgctg ctgtccccac tgtccgcgtc acaaaaagac 420 aagcctggac aaacaggccc atgaatcgga agcccaggtg gtacaggatg ttcaaaagcc 480 cagatgttcc taggggatgt gaaggcccat gtaaggttca atcgtttgag tccagacacg 540 atgtggtcca tataggtaag gtcatgtgca tctctgatgt cactcgtgga gttgggctta 600 ctcatcgcgt gggtaagagg ttttgcgtta agtccgttta tatcctgggt aagatatgga 660 tggatgaaaa tattaagacc aagaatcata cgaatagtgt gatgttcttc cttgtaaggg 720 atcgtaggcc tgttgataag ccccaggatt ttggtgaagt gtttaatatg ttcgataatg 780 aacctagtac agctacggtg aagaacatgc atcgtgatcg ttatcaagtc ctcaggaagt 840 ggagtgccac tgtcactggt ggtcagtatg cgagcaagga acaggcttta gttaggcgtt 900 tttttagagt taataattat gttgtgtata accagcaaga ggctggcaag tatgaaaatc 960 ataccgagaa tgcattgatg ctgtacatgg cgtgtactca tgcctctaac cctgtatacg 1020 ctacgctgaa gattagaatc tacttctacg attcggtcag caattaataa acattaaatt 1080 ttattaaatt agactgctca atactgtcag tcccagcgat tacattatat aatacatgtt 1140 ctacggcgtt tacaaccgta ttaatacata taatccctaa tctatcgagg tattttaata 1200 cttgggtctt aaataccctc aagaaacgcc aggtctgagg ctgtaaggtc gtccagacct 1260 tgaaatccat ccagcattga tgtagtccca acgctttcct caggttgtgg ttgaagcgta 1320 tctggatggt tattatgtcc cacggcctgt tgaacggccg gctgtcgtgc tggatgattt 1380 tgaaatagag gggatttgga acctcccaga tatatacgcc attcattgcc tgagctgcag 1440 tgatgagttc ccctgtgcgt gaatccatgg ttgtggcagt tgatgtgtac gtagtatgag 1500 cagccgcaat tgaggtctac tctccgtcgc cgaatggcct tacgcttagc tgccctgtgt 1560 tggaccttga ttggaacctg agtagagcgg ctcgctgagg gagatgaagg tcgcattctt 1620 cagagcccaa gccttcaatg cgctattctt cgcctcgtca aggaattctt tatagctgga 1680 attgggccca ggattgcaga ggaagatagt gggaattccc cctttaattt gaactggctt 1740 cccgtacttg gtgtttgact gccagtctct ttgggccccc atgaattcct taaagtgctt 1800 tagatagtgc ggatctacgt catcaattac gttgtaccat gcatcattgc tgtaaaccct 1860 aggactcaag tccagatgtc cacacagata attgtgtgga cctaatgacc tagcccacat 1920 tgttttgcct gtacgactat cgccctcgat gactatactg ttaggtctca aaggcctcgc 1980 agaggcaccc atgacgttct ctgacaccca ctcctcaagt tcatctggaa cttggtcaaa 2040 tgaagaggct gagaagggag acacatatac ctcgggagga ggtgtaaaaa tcctatctaa 2100 attagcattt agattatgaa attgtaaaac ataatccttg ggtgctaact ccttaatgac 2160 tctaagagcc tctggcttac tgcctgtgtt aagtgctgcg gcgtaagcgt cgtttgctga 2220 ttgctgtcct cctcttgcag atcttccatc gatctgaaac tcaccccagt cgatggtgtc 2280 tccatcctta tcgatgtagg acttgacgtc tgagctggac ttagcgctct gtatgttggg 2340 gtggaaactg gtgctactgc ttgggtgtac acaatcgaat tgccgattgt ttgtgattgt 2400 gagcttccct tcgaactgaa gcagagcatg gaggtgaggt tccccattct gatggagttc 2460 tctgcaaatt ttaataaatt tgatgtttgt cggaagactc aagcttcgga agaactcgag 2520 taagtgttct ttggtgagag aacacttagg gtatgtgagg aatatatttt tggactgaat 2580 tctgaaacgt gggtttctca tctttgactc ggtcaattgg agacacccct gagcaagtct 2640 ctagtgaatt ggagacaata tatatgtgtc tccaaatggc attcttgtaa ttctcaaaag 2700 ttacaatcaa atttcaaatt tgaatttgag atccaaaagc ggccatccgt ataatatt 2758 //