Dbfetch

Dbfetch

ID   KC404890; SV 1; linear; genomic RNA; STD; VRL; 582 BP.
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AC   KC404890;
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DT   06-MAY-2013 (Rel. 116, Created)
DT   04-JUN-2014 (Rel. 121, Last updated, Version 2)
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DE   Apple chlorotic leaf spot virus isolate BY-3-2 coat protein gene, complete
DE   cds.
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KW   .
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OS   Apple chlorotic leaf spot virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus.
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RN   [1]
RP   1-582
RX   PUBMED; 24318575.
RA   Chen S., Zhou Y., Ye T., Hao L., Guo L., Fan Z., Li S., Zhou T.;
RT   "Genetic variation analysis of apple chlorotic leaf spot virus coat protein
RT   reveals a new phylogenetic type and two recombinants in China";
RL   Arch. Virol. 159(6):1431-1438(2014).
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RN   [2]
RP   1-582
RA   Chen S., Zhou Y., Ye T., Hao L., Zhou T.;
RT   ;
RL   Submitted (20-DEC-2012) to the INSDC.
RL   State Key Laboratory for Agrobiotechnology, China Agricultural University,
RL   No. 2, Yuanmingyuan West Road, Beijing 100193, China
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DR   MD5; 8a6a17bb66e33322a337e04f25c5d27f.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.2
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..582
FT                   /organism="Apple chlorotic leaf spot virus"
FT                   /host="apple"
FT                   /isolate="BY-3-2"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Feb-2010"
FT                   /db_xref="taxon:12175"
FT   CDS             1..582
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:N0BJ71"
FT                   /db_xref="InterPro:IPR008879"
FT                   /db_xref="UniProtKB/TrEMBL:N0BJ71"
FT                   /protein_id="AGK64041.1"
FT                   /translation="MAAVLNLQLKVDADLKAFLAAEGRPLHGKTGAILEQILESVFANI
FT                   AIQGTSEQTEFLDLVVEVKSMEDQKVIGSYNLKEVVNMIKAFKTTSSDPNISNMTFRQV
FT                   CEAFAPEARNGLVKLKYKGVFTNLFTTMPEVGSKYPELMFDFNKGLNMFIMNKAQQKVI
FT                   TNMNRRLLQTEFAKSENEAKLSSVTTDLCI"
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SQ   Sequence 582 BP; 178 A; 119 C; 149 G; 136 T; 0 other;
     atggcagcag ttctgaacct acagttaaaa gtggacgcag atctgaaagc gttcctggcc        60
     gcagaaggca gaccccttca tggaaagaca ggggcaatcc tggaacagat actggagtcc       120
     gtcttcgcga acatagcgat acaaggaacg tcggagcaga cggaattcct ggatctagtg       180
     gtggaggtga aatcaatgga ggaccagaag gtaatcgggt cctacaattt gaaggaggtg       240
     gtcaacatga tcaaagcttt caaaactacc tcttcggatc cgaacatcag caacatgact       300
     ttccgccagg tgtgtgaggc tttcgcaccg gaggcaagaa acgggttggt taaactgaag       360
     tataaagggg ttttcactaa cctctttacg accatgccgg aagtaggtag caaatacccg       420
     gagctgatgt ttgatttcaa taagggtctt aacatgttta tcatgaataa ggcccagcaa       480
     aaagtcataa ctaatatgaa ccggcgtctt ttacaaactg agtttgcaaa aagtgagaat       540
     gaggcaaagc tctcatctgt tacgactgat ctttgcattt ag                          582
//