Dbfetch

Dbfetch

ID   KC333416; SV 1; linear; genomic RNA; STD; VRL; 2036 BP.
XX
AC   KC333416;
XX
DT   11-JUN-2013 (Rel. 117, Created)
DT   28-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE   Johnsongrass mosaic virus isolate CNPGL polyprotein gene, partial cds.
XX
KW   .
XX
OS   Johnsongrass mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2036
RX   DOI; .1094/PDIS-01-13-0013-PDN.
RX   PUBMED; 30722548.
RA   Silva K.N., Nicolini C., Silva M.S., Fernandes C.D., Nagata T.,
RA   Resende R.O.;
RT   "First Report of Johnsongrass mosaic virus (JGMV) Infecting Pennisetum
RT   purpureum in Brazil";
RL   Plant Dis. 97(7):1003-1003(2013).
XX
RN   [2]
RP   1-2036
RA   Silva K.N., Nicolini C., Nagata T., Resende R.O.;
RT   ;
RL   Submitted (13-DEC-2012) to the INSDC.
RL   Instituto de Ciencias Biologicas - IBD, Universidade de Brasilia, Bloco K,
RL   Brasilia, Distrito Federal 70919-970, Brazil
XX
DR   MD5; 7c3eb1c48dd1b8caeb5c04721cfb0571.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Pregap4 v. 1.5
CC   Sequencing Technology :: Standard Sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2036
FT                   /organism="Johnsongrass mosaic virus"
FT                   /host="Pennisetum purpureum"
FT                   /isolate="CNPGL"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:31742"
FT   CDS             <1..1563
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and coat protein"
FT                   /db_xref="GOA:R9TIJ4"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:R9TIJ4"
FT                   /protein_id="AGN29409.1"
FT                   /translation="GNNSGQPSTVVDNTLMLILAFTYALRVNNIENFEQDDIIKMFGNG
FT                   DDLLIAVRPDFEYLLDTFTGHFADLGLNFDFSNRTRNREDLWFMSHRGMLKDGVYIPKL
FT                   EPERIVAILEWDRSVEPEHRLSAICAAIIESWGYEELTYQIRRFYQWVLEQEPYKELAL
FT                   QGKAPYLSETALRKLYLDESCDQSELLHYYEEMYKNATMSDDVVDVEHQSGNEDAGKPK
FT                   TTPKTADSPGNNGSGTPASATNPPASDNPPSNNNNGKPKTQETPSNSGNGGSGGKVVTT
FT                   PKQNRDVDAGSGGTFTIPKLKKVSPKMRLPMVSNKSILNIDHLIQYKPDQRDISNARAT
FT                   HQQFQFWYNRIKKEYDVDDEQMKILMDGFMVWAIENGTSPDINGYWTMMDGEMQSEFPL
FT                   KPVVENAKPTLRQCMMHFSDAAEAYIEMRNLDEPYMPRYGLLRNLNDKSLARYAFDFYE
FT                   INSRTPNRAREAHAQMKAAAIRGATNHLFGLDGNVGESSENTERHTAADVTRNVHSYRG
FT                   AKI"
XX
SQ   Sequence 2036 BP; 684 A; 392 C; 460 G; 500 T; 0 other;
     gggaacaata gtgggcagcc atcaacagtc gtggataaca cattaatgct tattctagca        60
     ttcacatacg cactgcgagt caacaatatt gaaaactttg agcaggatga tataatcaaa       120
     atgtttggca atggtgacga cttgctaatc gcagtgagac cagactttga atatctgcta       180
     gacacattca caggacactt tgctgacctt ggtctgaact ttgatttttc taacaggaca       240
     agaaatagag aggatttatg gtttatgtca caccggggta tgctgaaaga tggggtttat       300
     ataccgaaac tggaaccaga gaggattgta gccatcttag agtgggatag aagcgtcgaa       360
     ccagaacatc gtctctcagc aatatgtgca gcaattatcg aatcatgggg ttacgaggag       420
     ctaacctatc aaatccgacg gttctaccag tgggtccttg agcaagagcc atacaaggaa       480
     ttggcattgc agggcaaagc cccatacttg tcggagacag ctttgcgcaa gttatacctt       540
     gatgagtcat gtgatcagag tgaactgcta cattattatg aagaaatgta caagaatgct       600
     acaatgagtg atgatgtagt agacgtcgaa catcagtcag ggaatgaaga cgctggaaag       660
     ccaaaaacaa caccaaaaac agcagactca cctggaaaca atggttcagg tacaccagca       720
     tcggcaacaa acccaccagc aagtgacaac ccaccctcaa ataacaacaa tggaaaacca       780
     aaaacacaag aaacacccag taacagtgga aatggaggtt caggtgggaa agtggttaca       840
     acacctaaac aaaatcggga tgttgatgct ggttcagggg gaacttttac gataccaaaa       900
     ctcaagaaag tctcaccaaa aatgcgttta ccaatggtga gcaacaaatc gatcttaaac       960
     atagatcatc tgattcaata caaaccagat cagagagaca tctcaaatgc tcgtgcgaca      1020
     catcaacagt tccaattttg gtataatcgc atcaagaaag aatatgatgt tgatgacgag      1080
     caaatgaaaa ttttaatgga tggatttatg gtatgggcta ttgagaatgg aacatctcct      1140
     gatattaatg gttattggac catgatggat ggtgagatgc agtcagaatt cccactaaaa      1200
     ccagttgtgg agaatgctaa accaacatta cgacagtgca tgatgcattt tagtgatgcc      1260
     gcagaagcat atattgaaat gaggaattta gatgaaccat atatgccaag gtatggtctt      1320
     cttaggaatc taaatgacaa aagcctagct cgatacgcat ttgatttcta tgagatcaat      1380
     tcgcgtacac caaatagagc aagagaggca catgcacaaa tgaaagcagc tgccatcaga      1440
     ggggccacaa atcatttatt tggtcttgat ggtaatgttg gtgagagttc tgaaaacaca      1500
     gagcgacata cggcagcaga tgtcacacgg aatgttcatt cataccgtgg ggcgaaaatc      1560
     taagaagaag gaacaatcgt ctatctgacg taaaaggatg actgaccaag tctgaaaatt      1620
     ggtatgatac tggttccgaa ttgtccatac agagtcagag atgaacagag agcactataa      1680
     aagtgtagta gagatcgaga gataacatgt aagccctcaa tgaccatgcc taagcgctag      1740
     cattgtgtgg agctctaact ctaaggagtt atcttccagg atttggtaat ctcgtacctc      1800
     gaaacactta tgagccctca gcatcagatg acactgggac tatgtatctt cacttggtaa      1860
     tcactagtat tataaatcgt tctgcatcgt tacgagtggt attttatacc ctgggtgggg      1920
     ttctaatgct gtgttacagt tacgaacaac ggcccgtaat gatcgtattt actagttgca      1980
     tcaaaccata tgaacctaag agtgagcttc tcaccacagt ttcatatggc gagatt          2036
//