ID KC312670; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312670; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate SX-XA2, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX DR MD5; 86bfa4c6185f0be6d0952f0475fd7269. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="SX-XA2" FT /mol_type="genomic DNA" FT /country="China:ShanXi, Xi'An" FT /collection_date="27-Sep-2012" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="AV2" FT CDS 148..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:M4QJU0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4QJU0" FT /protein_id="AGH27839.1" FT /translation="MWDPLLNEFPESVDGFRCMLAIKYLQSVEETYDPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCAHCPRHKQASIMDVQAHV FT PEAQNIQNVSKP" FT gene 308..1084 FT /gene="AV1" FT CDS 308..1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:M4QL73" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QL73" FT /protein_id="AGH27840.1" FT /translation="MSKRPGDIIISTPVSKARRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYERRDDIKHTGIVRCVSDVTLGSGITH FT RVGKRFCVKSIYFLGKVWMNENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMLDN FT EPSTATVKNDLRDRFQVMRKFHATVIRGPSGMKEQALVKRFFRINSHVTYNHQEAAKNE FT NHTENALLLYMACTDASNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:M4QHJ2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QHJ2" FT /protein_id="AGH27841.1" FT /translation="MDSRTGELITAPQAENGVFISEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFINFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIKAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="AC2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:M4QHD1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QHD1" FT /protein_id="AGH27842.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKISKKKPIRRKCVDLDCGCSYYLHI FT NCNNHGFTHRGTHHSSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFYSDKIQPQ FT HQEGIGDTQMFYQLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="AC1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:M4QUH2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QUH2" FT /protein_id="AGH27843.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSEEEALSQLKNLETPPNRKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNERFFDLVSPNWSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDRRSTRGGQQSANAAYAEALNSGSKSEALNILKEKAPKDYILQFQNL FT SSNLDRIFSPPLEVYVSPFLSFSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMSARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKELMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDIQEETNKA" FT gene complement(2171..2464) FT /gene="AC4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QJU4" FT /protein_id="AGH27844.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSIADQLEEVNNLPTPHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 755 A; 528 C; 606 G; 892 T; 0 other; accggatggc cgcgcctttt ctttttactt ggtccccacg agggttccac agactttact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtagtttgtc ttgcactatg tgggatccac ttctaaatga atttcctgaa 180 tctgttgacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgatccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggctcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtgccca ttgtccaagg 420 cacaaacaag cgtcgatcat ggacgtacag gcccatgtac cggaagccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcgacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactct 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatgaatg aaaatattaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtt cgtgatcgaa ggccttatgg aaacagccca atggattttg gacaggtttt 780 taatatgctc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattcgtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagaggtttt ttagaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagaat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacggatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcaa ctgctttgat tacattgtta attgaaatta cacccagact 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgataaa acatttgtgt atccccaata ccttcctgat 1320 gttgtggttg aatcttatct gaatagaaat gatgtcgtgg ttcattagaa atggcctctg 1380 gctgtgttct gttatcttga aatagagggg attgtttatc tccgagataa aaacgccatt 1440 ctctgcttga ggagctgtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcac ccacagtcta ggtctacaca cttacgcctt attggtttct 1560 tcttggatat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggctttcc gtactttgtg ttgctttgcc agtccctctg ggcccccatt 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt aaacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg ccgacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gcctcgcagc ggaagatacg acgttctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga aaaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttctgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca 2220 tatgcggcgt tggcagattg ttgacctcct ctagttgatc tgcgatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gaccagtttg gggataccag gtcgaagaac 2400 cgttcgttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttc tatttggtgg ggtttctagg 2520 ttttttaatt gggaaagtgc ttcctcttca gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agctgccatc cgtataatat t 2781 //