ID KC312669; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312669; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate SX-XA1, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX DR MD5; 439db189c6b4d1098195c73c269ff277. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="SX-XA1" FT /mol_type="genomic DNA" FT /country="China:ShanXi, Xi'An" FT /collection_date="25-Sep-2012" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="AV2" FT CDS 148..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:M4QUG3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4QUG3" FT /protein_id="AGH27833.1" FT /translation="MWDPLLNEFPESGHGFRCMLAIKYVQPVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARVEGSPKAELRQPIQQPCCSPHCPRHKQATIMYVQAHV FT PEAQNIQNVSKP" FT gene 308..1084 FT /gene="AV1" FT CDS 308..1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:M4QJT6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QJT6" FT /protein_id="AGH27834.1" FT /translation="MSKRPGDIIISTPASKVRPRLNFDSPFSSRAAVPIVQGTNKRRSC FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRADIKHTGIVRCVSDVTRGSGITD FT RVGKRFCVKSIYFLGKVWMDENVKKQNHTNQVMFFLVRDRRHYRNSPIDFGQVFNMFDN FT EPSTATVKNYLRDRFQVMRKFHATVIRGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHAYNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:M4QL69" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QL69" FT /protein_id="AGH27835.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNRLYFKITEHSQRPFLMNNDI FT ISIQIRFNQNIRKALGIHKCLLHFRIWTTLQPQTGRFLRVFRYQVLKYLYSLGVISINN FT VIRAVDHVLYDELANTINVTATHDIKYKFY" FT gene complement(1226..1633) FT /gene="AC2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:M4QHI7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QHI7" FT /protein_id="AGH27836.1" FT /translation="MQSSSPSTSHCSQVSINVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRAQPEAISNEQRHHFHSDKIQPE FT HQEGIGDSQMFTPLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="AC1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:M4QHC7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QHC7" FT /protein_id="AGH27837.1" FT /translation="MPRLFKIYAKNYFLTYPNCSVSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFQGKYQCKNQRFFDLVSPNRSAHFHPNIQAPMCTADVKTYVEL FT GRDFIDFGVFQIDSRSARAGQQSANDAYAEALNSGSKSEALNILKEKARKDYILQFHNL FT SSNLDRLFSPPLEVYISPFLSSSFNQVPDELDEWVAENVVSSAARSWRPIGIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVHSNDVWYNVIDDVDPHYLKHFKEFMGAQSDWQS FT NTKYGKPIQIKGGVPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA FT SVNQRPTQDSQEETNKA" FT gene complement(2171..2464) FT /gene="AC4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QUG7" FT /protein_id="AGH27838.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYLQTGQHISIRTFRHQCAQ FT QMSRPTWSLAETSLILEFSKSIADQLEQVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 760 A; 538 C; 616 G; 867 T; 0 other; accggatggc cgcgccttct ctttttatgt ggtccccacg agggttccac atacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtagtctgtc ttgcaatatg tgggatccac ttctaaatga atttcctgaa 180 tctggtcacg gatttcgttg tatgttagct attaaatatg tgcagcccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta ataagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcgt cgaaggttcg 360 cccaaggctg aacttcgaca gcccattcag cagccgtgct gcagtcccca ttgtccaagg 420 cacaaacaag cgacgatcat gtacgtacag gcccatgtac cggaagccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gctgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactgaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatgtcaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtt cgtgatagaa ggcactatcg aaacagccca atcgattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aactgtgaag aattatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattcgtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctataatcca gtgtatgcaa ctatgaaaat acgcatttat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt tgctgttaca tttattgtgt ttgcaagttc 1140 atcatacaat acatgatcaa ctgctctgat tacattgtta attgaaatga caccaagact 1200 atataaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agtggagtaa acatttgtga atccccaatg ccttcctgat 1320 gttctggttg aatcttatct gaatggaaat gatgtcgttg ttcattagaa atggcctctg 1380 gctgtgctct gttatcttga aatagaggcg attgtttatc tcccagataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg acgttgattg acacttgcga acagtggctc gtagagggtg 1620 acgaagattg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcatctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aactccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtcgctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacaca 1860 tcattactgt gcacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agcgacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacctatg 1980 ggtctccatg accgcgcagc ggaagatacg acgttctcgg cgacccactc gtcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa tataaacttc taaaggagga 2100 ctaaaaagcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttcgg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca 2220 tatgcgtcgt tggcagattg ctgacctgct ctagctgatc tgctatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcg gccaagctcc acgtaggtct tgacatctgc tgtgcacatt 2340 ggtgcctgaa tgttcggatg gaaatgtgct gacctgtttg gagataccag gtcgaagaac 2400 cgttggttct tacattggta tttgccttgg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttt tatttgttgg ggtttcgagg 2520 ttttttaatt gggaaagtgc ttcctcttta gagacagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccga atggctattt 2700 ggtaattttg taaaagtaca ttgcaattca acattcaaaa ttcaaaaatc aaatcaataa 2760 agcggccatc cgtataatat t 2781 //