ID KC312668; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312668; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate SH2, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX DR MD5; 32cda3cc91e6a7910ed2a5d5f82305fc. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="SH2" FT /mol_type="genomic DNA" FT /country="China:ShangHai" FT /collection_date="12-Sep-2012" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="AV2" FT CDS 148..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:M4QHB8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4QHB8" FT /protein_id="AGH27827.1" FT /translation="MWDPLLNEFPESVHGFRCMIAIKYLQSVDETYEPNTLGHDLIRDL FT ISVVRARDYAEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCTRHKQATIIDVQAHV FT PEAQNIQNVSKP" FT gene 308..1084 FT /gene="AV1" FT CDS 308..1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:M4QUF9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QUF9" FT /protein_id="AGH27828.1" FT /translation="MPKRPGDIIISTPASKVRLRLNFDSPYSSRAAVPIVQGTNKRRSS FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEHRDDIKHTGIVGCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNVFDN FT EPSTATVKNDLRDRFQVMRKFHATVIVGPSGMKEQALVKRFFRINSHATYNHQEAAKYE FT NHTENALLLYIACTHASNPVYATMTIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:M4QJT1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJT1" FT /protein_id="AGH27829.1" FT /translation="MDSRTGELITAPQAENGVFIWEIDNPLYFKITEHSQRPFPINNDI FT ISIQIRFNHNISKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISNNN FT VIRAVDQVLYDVLENTINVTATHDIKYKFY" FT gene complement(1226..1633) FT /gene="AC2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:M4QL66" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QL66" FT /protein_id="AGH27830.1" FT /translation="MQSSSPSTSHCSQVSIKVQHKIAMKKPIRRKRVDLDRGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDRQSPLFQDNRTQPEAISNKQRHHFHSDKIQPQ FT HQQGIGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="AC1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:M4QHI3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QHI3" FT /protein_id="AGH27831.1" FT /translation="MPRLFKIYAKNYFLTYPNCSVSKEEALSQLKNLEAPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDRRSARGGQQSGNDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLDVYVSPFLSSSFNQVPDELDEWVAENVVSSAARPWTPISIVIEGDSR FT TGKTMWARTLGPHNYLCGHLDLSPKVYSNDVWYNAIDDVDPHYLKHFKEFMGAQRDWQS FT IAQIGKPIQIKGGIPTIFLCNPAPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA FT SINQGPTQDSHEETNKA" FT gene complement(2171..2464) FT /gene="AC4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QHC4" FT /protein_id="AGH27832.1" FT /translation="MGNHISMCLSNSKANTNVRTSGSSTWYPQTGQPISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSIGDQLEEVSNLATTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 755 A; 540 C; 613 G; 873 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccaca agggttccac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtagtctgtc ttgcaatatg tgggatccac ttctaaatga atttccggaa 180 tctgttcacg gatttcgttg tatgatagct attaaatatt tgcagtccgt tgacgaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg ccgaagcgac caggcgatat aatcatttcc acgcccgcct cgaaggttcg 360 cctaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtacaagg 420 cacaaacaag cgacgatcat cgacgtacag gcccatgtac cggaagccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcatcgg gatgatatta agcatactgg tattgttggt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gagattctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtt cgtgatagaa ggccctatgg aaacagccca atggattttg gacaggtttt 780 taatgtgttc gataatgagc ccagtaccgc aactgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattgttggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttagaattaa cagtcatgca acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaacgc cttgttattg tatattgcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgacaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt tgctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acttgatcaa ctgctctgat tacattgtta tttgaaatta caccaagact 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccaatg ccttgctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgttg tttattggaa atggcctctg 1380 gctgtgttct gttatcttga aatagagggg attgtctatc tcccagataa aaacgccatt 1440 ctctgcttga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcag ccacggtcta ggtctacacg cttacgcctt attggtttct 1560 tcatggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaagattg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtccaga 1680 tattccctat atgaggaggt aggtgctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gatctgcgcg atgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatggcgtt gtaccacaca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagtcctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtgtccatg gccgcgcagc ggaagatacg acgttctcgg cgacccactc gtcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacgtc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca 2220 tatgcgtcgt tgccagattg ctgacctcct ctagctgatc tcctatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgggct gacctgtttg gggataccag gtcgaagaac 2400 cgctggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttt tatttgttgg ggcttctagg 2520 ttttttaatt gggaaagtgc ttcctcttta gagacagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc aaatcaataa 2760 agcggccatc cgtataatat t 2781 //