ID KC312667; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312667; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate SH1, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX DR MD5; c78657f30db4fbef340511eabb3dcfe4. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="SH1" FT /mol_type="genomic DNA" FT /country="China" FT /collection_date="11-Sep-2012" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="AV2" FT CDS 148..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:M4QHH6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4QHH6" FT /protein_id="AGH27821.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIIHLQSVEETYEPNTLGHDLIMDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELPQPIQQPCCCPHSPRHKQATIIDVQAHV FT PEAQNIQNVSKP" FT gene 308..1084 FT /gene="AV1" FT CDS 308..1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:M4QHB3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QHB3" FT /protein_id="AGH27822.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFHSPYSSRAAVPILQGTNKRRSL FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQQDDIKHTGIVRCLSDVTRGSGITH FT RVGKRFCVKLIYFLGKVWMDENIKKQNHTNQVMFLLVRDRRPYGNSPMDFGQVFNMCDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSVTSHQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMQIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:M4QUF2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QUF2" FT /protein_id="AGH27823.1" FT /translation="MDSRTGELITAPQAENGVFIWEINYPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHICFINFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVLSINN FT VIRAVDHVFYDVLENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="AC2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:M4QJS6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QJS6" FT /protein_id="AGH27824.1" FT /translation="MQPSSPSTSHCSQVSIKVQHQIAKKKPIRRKRVDLGCGCSYYFHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKLSPLFQDNRTQPKAISNEPRHHFHSDKIQPQ FT HQEGIGDSHMFYQLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="AC1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:M4QL60" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QL60" FT /protein_id="AGH27825.1" FT /translation="MPRLFKIYAKNYFLRYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEAKYQSKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGNFIDFGVFQIDGRSTRGGQQSANHAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVADNVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKMYSNDAWYNVIDDVDPHYLKHFKELMGAQRDSQS FT NTKYGKPIQMKGGIPTIFLCNPAPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTPDSQEETNKA" FT gene complement(2171..2464) FT /gene="AC4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QHI1" FT /protein_id="AGH27826.1" FT /translation="MGNHISMCLSNSKPNTKVRTNGSSTWYPQTGQHISIRTFRLLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVNNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 753 A; 530 C; 608 G; 890 T; 0 other; accggatggc cgcgcctttt ctttttacgt ggtccccacg agggttccac agacgttact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtagtttgtc ttgcactatg tgggatccac ttctaaatga atttcctgaa 180 tccgttcacg gatttcgttg tatgttagct atcatacatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attatggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttccaca gcccatacag cagccgtgct gctgtcccca ttctccaagg 420 cacaaacaag cgacgatcat tgacgtacag gcccatgtac cggaagccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacag gatgatatta agcatactgg tattgttcgt tgtcttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaattga tatatttttt 660 aggtaaagtc tggatggatg aaaatattaa gaagcagaat cacactaatc aggtcatgtt 720 cttattggtt cgtgatagaa ggccttatgg aaacagccca atggattttg gacaggtttt 780 taatatgtgc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctgtaa cgtcgcatca 900 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc atcaggaggc 960 tgccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcgt gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgcaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatagaat acatgatcaa ctgctctgat tacattgtta attgaaagta caccaagact 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgataaa acatatgtga atccccaata ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctttg 1380 gctgtgttct gttatcttga aatagagggg atagtttatc tcccagataa aaacgccatt 1440 ctctgcttga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaagta gtatgagcag ccacagccta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat ctggtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtgctgga ttgcagagga agatagtggg aattccccct 1740 ttcatttgaa tgggcttccc gtactttgtg ttgctttgcg agtccctctg ggcccccatt 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acatctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacatagt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagatacg acgttatcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctagatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca 2220 tatgcgtggt tggcagattg ttgacctcct ctagttgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa tgaagtttcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gcagcctgaa tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac 2400 cgttggttct tactttggta tttggcttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttt tatttgttgg ggtttctagg 2520 ttttttaatt gggaaagtgc ttcctcttta gatagagaac aattgggata tcttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggccatc cgtataatat t 2781 //