ID KC312664; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312664; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate SD-LC, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX DR MD5; d6d632869b46f5d4132c467c6038476f. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="SD-LC" FT /mol_type="genomic DNA" FT /country="China:ShanDong, liaoCheng" FT /collection_date="07-Aug-2012" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="AV2" FT CDS 148..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:M4QUD5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4QUD5" FT /protein_id="AGH27803.1" FT /translation="MWDPLLNQFPESVHGFRCMLAIKYLQSVEQTYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHLHARLEGSPKAELRQPIQQPSCCPHCPRHKQATILDVQAHV FT PDAQNIQNVSKP" FT gene 308..1084 FT /gene="AV1" FT CDS 308..1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:M4QJQ6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QJQ6" FT /protein_id="AGH27804.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRMPRIYRMYRSPDVPRGCEGPCKVQTYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVRSIYFLGKVWMDENTKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDT FT EPSTATVKNDLRDRFQVMRKFHATVIGEPSGMKEQALVKRFFRINCHVTYNHQEAAKYE FT NHTENALLLYMPCTHASNPVYATLKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:M4QL48" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QL48" FT /protein_id="AGH27805.1" FT /translation="MDSRTGELITAPQAENGVFIWEIINPLYFKITEHSQSPFLMNHDI FT ISIQIRFNHNIRKILGIHTCFLNFRIWTTLQPQTGRFLRVCRYQVLKYLDSLGVISINN FT VIRAVDHVESAVLENTINVTQTHDIKYKFY" FT gene complement(1226..1633) FT /gene="AC2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:M4QHG3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QHG3" FT /protein_id="AGH27806.1" FT /translation="MQPSSPSTSHCSQVSIKVQLKIAKKKPIRRKRVDLACGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDNQSPLFQDNRTQPESISNEPRHHFHSDKIQPQ FT HQEDIGDSHMFSQLPNLDDITASDWSFLKSM" FT gene complement(1542..2615) FT /gene="AC1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:M4QH98" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QH98" FT /protein_id="AGH27807.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSTEEALSQLKNLETPTNKKYINVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSADFQQSIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAEKVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNNLCGHLDLSPKVYSNDAWNNVIDDVDPHYLKHFKEFMGAQRDWHS FT NTKYGKPIQIKGGIPTIFLCNRGPTSSFREYLDEEKNISLKNWALKNATFITLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2171..2464) FT /gene="AC4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QUD9" FT /protein_id="AGH27808.1" FT /translation="MGNHISMCLSNSKASTNARTNGSSTWYPQTGQQISNRAFRQLRAQ FT QMSRPTWRKTETSLISEFSKSMADQLEEVSNLPTTHMRRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 750 A; 543 C; 613 G; 875 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtcctcacg agggttcccc agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtagtttgtc ttgcactatg tgggatccac ttctaaatca atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgagcaaact 240 tacgagccca atacattggg ccacgattta attagagatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatctcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgagct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcct ggacgtacag gcccatgtac cggatgccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccgtgtaaag tccagactta 540 tgagcaacgg gacgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttagatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatactaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtt cgtgacagaa ggccttatgg aaacagccca atggattttg gacaggtttt 780 taacatgttc gatactgagc ccagtacggc aaccgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtgag ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttagaattaa ctgtcatgta acttataatc atcaggaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatgccat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctctgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttgtgttaca tttattgtgt tttcaagtac 1140 agcagattct acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact 1200 atctaaatac ttaagaactt gatatctaca tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatgtgtga atccccaata tcttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggactctg 1380 gctgtgttct gttatcttga aatagagggg attgattatc tcccagataa aaacgccatt 1440 ctctgcttga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcag ccacaggcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgagttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 atgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctaa atgaggaggt aggtcctcga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctatgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gttccacgca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaattatt atgtgggcct 1920 agagacctgg cccacattgt cttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gacgcgcagc ggaagatacg accttctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctccgca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgccatcgat ttggaaaact 2280 ccgaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgctctgttg gaaatctgct gacctgtttg gggataccag gtcgaagaac 2400 cgttggttct tgcattggta cttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaacgttg atgtattttt tatttgttgg ggtttctagg 2520 ttttttaatt gggaaagtgc ttcctctgta gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca ttgcaataca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggccatc cgtataatat t 2781 //