ID KC312663; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312663; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate JS-NT, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX DR MD5; 8cfdcf879f801bacd32a1aca71106bb7. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="JS-NT" FT /mol_type="genomic DNA" FT /country="China:JiangSu, NanTong" FT /collection_date="14-Aug-2012" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="AV2" FT CDS 148..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:M4QH75" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4QH75" FT /protein_id="AGH27797.1" FT /translation="MWDPLLYEFPESVHGFRCMLATKYLQSVEETYEPNTLGDDLIRDL FT ISVVSARDYVEATRRYNHFHARLEVSPKAELRQPIQQPCCCSHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 308..1084 FT /gene="AV1" FT CDS 308..1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:M4QUC0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QUC0" FT /protein_id="AGH27798.1" FT /translation="MSKRPGDIIISTPVSKFRRRLNFDSPYSSRAAVPIVQGTNKRPSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCQVQSYEQRDDIKHTGSVRCVSDVTRGSGITH FT RVGKRFCIKSIYFLGKVWMDENIKKKNHTNQVMFFLVRVRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHAIVIGGPSGMKEQALVKRFFRINSHVTYDHQEAAKYE FT NHTENALLLYMACRHASNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:M4QJP6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJP6" FT /protein_id="AGH27799.1" FT /translation="MDSRTGELITAPLAENGVFIWEINNPLYFKIAEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCLTDFRIWTTLQPQTGRFLRVFRYQVLKYLDNLGVISINN FT VIRAVDPVLYDVLENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="AC2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:M4QL37" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QL37" FT /protein_id="AGH27800.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVALDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDSRTQPEAISNEPRHHFHSDQIQPQ FT HQEGIGDSQMLDRFPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="AC1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:M4QHF7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QHF7" FT /protein_id="AGH27801.1" FT /translation="MPRLFKIYAKNYFLTYRNCSLSKEEALSQLKNLESPTDKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKSQRFFDLVSPNRSAHFHPNIQAAKRSTDVKTYVEK FT DGDFIDFGVFQIVGRSTRGGQQSDNDAYAEALNSGSKSEALNILKEKAPKDYILQFDNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVADNVVSSAARPWRPISIVIEGDSR FT TGKTMCARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFEELMGAQRDWQS FT NTKYGKPIQIKGGIPTIFFCNPGPTSSYREYRDEEKNISLKNWALKNATFVTLYEPLFA FT SINQSPTQDSQEETNKA" FT gene complement(2171..2464) FT /gene="AC4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QH92" FT /protein_id="AGH27802.1" FT /translation="MGNHISMCLSNSKANTNVRANGSSTWYPQTGQHISIRTFRQLRGQ FT QMSRPTWRKTETSLILEFSKSLADQLEEVNNLTTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 753 A; 533 C; 610 G; 885 T; 0 other; accggatggc cgcgcctttt ctttttacgt ggtcctcacg agggttccac agacgttact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtagtttgtc ttgcactatg tgggatccac ttctatatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct actaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg cgacgattta attagggatc ttatatctgt tgtaagcgcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaagtttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgttccca ttgtccaagg 420 cacaaacaag cgaccatcat ggacgtacag gcccatgtac cggaagccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtcaag tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tagtgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt attaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatattaa gaagaagaat cacactaatc aggtcatgtt 720 cttcttggtt cgtgttagaa ggccttatgg aaacagccca atggattttg gacaggtttt 780 taatatgttc gataacgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctatagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttatgatc atcaggaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtaggcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgtgaca tttattgtgt tttcaagtac 1140 atcatacaat acaggatcaa ctgctctgat tacattgtta attgaaatta caccaagatt 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga aatcggtcaa gcatttgtga atccccaata ccttcctgat 1320 gttgtggttg aatctgatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380 gctgtgttct gctatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgctaga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcag ccacagtcta gggctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg actttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctcga 1680 tattccctat atgaggaggt aggtcctgga ttgcagaaga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatt 1800 aattcctcga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcgttactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtggtcct 1920 agagacctgg cgcacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagatacg acgttatcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa catatacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatcaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca 2220 tatgcgtcgt tgtcagattg ttgacctcct ctagttgatc tgccaacgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgacctctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac 2400 cgttggctct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttt tatctgttgg cgattctagg 2520 ttttttaatt gggaaagtgc ttcctcttta gagagagaac aattgcgata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca ttgcgattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggccatc agtataatat t 2781 //