ID KC312662; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312662; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate JS-NJ, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX DR MD5; 0b17895c685b0df507803e699e0fec24. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="JS-NJ" FT /mol_type="genomic DNA" FT /country="China:JiangSu, NanJing" FT /collection_date="12-Aug-2011" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="AV2" FT CDS 148..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:M4QHC2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4QHC2" FT /protein_id="AGH27791.1" FT /translation="MWDPLLNEFPQSVRGFRCMLAIKYLQSVEETYERNTLGHDLIRDL FT ISVVRARDYVEATRRYNHIHARLEGSPKAELRQPIQQPCCCRHCPRHKQATIMDVQAHI FT PETQNIQNVSKP" FT gene 308..1084 FT /gene="AV1" FT CDS 308..1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:M4QH53" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QH53" FT /protein_id="AGH27792.1" FT /translation="MSKRPGDIIISTPVSKVRRKLNFDSPYSSRAAVAIVQGTNKRRSW FT TYRPIYRKPRIYRMYRSPDVPRGCEGPCKVQSYELRDDIKHTGIVRCVSDVARGSGITH FT RVGKRFCVKSIYFLGKVWMNENIKKQNHTNQVMFFLVRDRRPDGNSPMDYGQVFNMFDN FT EPSTATVQNDLRDRFQVMRKFHATVIGGPSGMKEQALAKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTRAFDPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:M4QUA8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QUA8" FT /protein_id="AGH27793.1" FT /translation="MDSRTGELITAPQAENRVFIRLLNNPLYFKITEHSRSSFLMNHDI FT ISIQIRFNNNIRKILGIHKCFINFRIWTTLQPQTGRFLRVFRYQVLKYLDSLRVISINN FT VIRAVDHVLHDVLENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="AC2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:M4QJM8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QJM8" FT /protein_id="AGH27794.1" FT /translation="MQPSSPSTSHCSQVSIKVQYKIAKKKPIRRKRVDLNCGCSYYLHI FT NCNNHGFTHRGTHHCSSSRESRFYQTAKQSPLFQDNRTQPKLISNEPRHHFHSDKIQQQ FT HQEDIGDSQMFYQLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="AC1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:M4QL23" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QL23" FT /protein_id="AGH27795.1" FT /translation="MPRLFKRYATHESLAYPNCSLSKDEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFERTEKCKNQRFFDLVSPNRSEHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSTNDAYAEALNSGSKSEALNILKEKAPKDYILQFHTL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENIVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLGPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIRTIFLCNPGPTSSYREYLEEEKNISLKNWALKNATFITLYEPLFA FT SINQGPIQDSQEETNKA" FT gene complement(2171..2464) FT /gene="AC4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QHE2" FT /protein_id="AGH27796.1" FT /translation="MGNHISMCLSNSNVRRNVRTNGSSTWYPQTGQNISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSRSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 760 A; 528 C; 610 G; 883 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccacg agggttccac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtagtttgtc ttgcactatg tgggatccac ttctaaatga atttcctcaa 180 tctgttcgcg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagcgca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatatcc acgcccgtct cgaaggttcg 360 ccgaaagctg aacttcgaca gcccatacag cagccgtgct gctgtcgcca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatatac cggaaaccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagctacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttgctcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatgaatg aaaatattaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtt cgtgatagaa ggcctgatgg aaacagccca atggattatg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgcag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagct aagagatttt ttagaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttatta tatatggcat gtacacgtgc 1020 atttgatcca gtatatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatgcaat acatgatcaa ctgctctgat tacattgtta attgaaatta cacgaagact 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgataaa acatttgtga atccccaata tcttcctgat 1320 gttgttgttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atgagcttcg 1380 gctgtgttct gttatcttga aatagagggg attgtttagc agtctgataa aaacgcgatt 1440 ctctgcttga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcag ccacagttta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtattgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 atgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcttctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtgcg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg tgcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg gcctaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt cttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagatacg atgttctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa gtatgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca 2220 tatgcgtcgt tggtagattg ctgacctcct ctagctgatc tgccatcgat ctggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgttct gacctgtttg gggataccag gtcgaagaac 2400 cgttggttct tacatttctc cgtacgttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttt tattggttgg ggtttctagg 2520 ttttttaatt gggaaagtgc ttcatcttta gagagagaac aattgggata tgctaaggac 2580 tcatgtgtag catatctttt aaataaacga ggcatgttga aatgaattgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca ttgcaataca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggccatc cgtataatat t 2781 //