ID KC312657; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312657; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate HB-SJZ, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX DR MD5; 082e732c84d4257ae16d83599081386b. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="HB-SJZ" FT /mol_type="genomic DNA" FT /country="China:HeBei, ShiJiazhuang" FT /collection_date="01-Aug-2012" FT /db_xref="taxon:10832" FT gene 148..498 FT /gene="AV2" FT CDS 148..498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:M4QH84" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M4QH84" FT /protein_id="AGH27761.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYVPNTLGHDLIRDL FT ISDVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCFPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 308..1084 FT /gene="AV1" FT CDS 308..1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:M4QH15" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M4QH15" FT /protein_id="AGH27762.1" FT /translation="MSKRPGDIIISTPVSKVHRRLNFDSPYSSRAAFPIVQGTNKRRSW FT TYKPMYRKPRIYRMYRSPDVPCGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGVTH FT RVSKRFCVKSIYFLGKVWMDENIKKQIHTNQVMFFLVRDRRPYGNGPMDFGQVFNMFDN FT EPSTATVKNDVRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYAAMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:M4QU80" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QU80" FT /protein_id="AGH27763.1" FT /translation="MDSHTGELLSAPQAENGVFIWEINNPLYFEITEHSQRPFLMNDDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN FT VFRAVDHVLYDVPENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="AC2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:M4QJK0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QJK0" FT /protein_id="AGH27764.1" FT /translation="MQPSSPSTSHCSQVTIKVQRKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTPLCSSSREWRFYLGDKQSPLFRDNRTQPEAISNERRHHFHSDKIQPQ FT HQEGIGDSQMFSQLQNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="AC1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:M4QKZ4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QKZ4" FT /protein_id="AGH27765.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKVEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSTRAGQQSANDAYAEALNSRSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLYSSFNQVPDELEEWVAENVVSSAARPWRPISNVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKELMGAQRDWQS FT NIQYGKPIQIKGGIPTIFFCNPGPTSSYREYLDEEKNISLKNWALKNATLVTLYEPLFA FT SNNQGPTQDSQEETNKA" FT gene complement(2171..2464) FT /gene="AC4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M4QH91" FT /protein_id="AGH27766.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQAGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQPEQVNNLPTTHMPRHSIHAVNPRPSIY" XX SQ Sequence 2781 BP; 756 A; 527 C; 610 G; 888 T; 0 other; accggatggc cgtgcctttt ctttttacgt ggtccccacc agggttacac agaagttact 60 gtcaaccaat caaattgcat cctcacacgt tagataagtg ttcgtttgtc tttatatacc 120 tggtccccaa gtagtttgtc ttgcactatg tgggatccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgtgccca atacattggg ccacgattta attagggatc ttatatctga tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttca 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctttcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacaa gcccatgtac cggaagccca gaatatacag 480 aatgtatcga agccctgatg ttccttgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga gttactcaca gagtgagtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatattaa gaagcagatt cacactaatc aggtcatgtt 720 cttcttggtt cgtgatagaa ggccttatgg aaacggccca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatgtgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcag ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaggtac 1140 atcatacaat acatgatcaa ctgctctgaa tacattgtta attgaaatta caccaagact 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattctga agttgagaaa acatttgtga atccccaata ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtcg ttcattagaa atggcctctg 1380 gctgtgttct gttatctcga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcttga ggagcagaga ggagttcccc tgtgtgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgcgttgg accttgattg ttacttgcga acagtggctc gtagagggtg 1620 acgagggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagaaga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtattgtatg ttgctttgcc agtccctctg ggcccccatt 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac attacttatg 1980 ggtctccatg gccgcgcagc ggaagatacg acgttctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaataaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc gtgaattgag tgcctcggca 2220 tatgcgtcgt tggcagattg ttgacctgct ctggttgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gacctgcttg gggataccag gtcgaagaac 2400 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atatattttt tatttgttgg ggtttctagg 2520 ttttttaatt gagaaagtgc ttccacttta gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgagttgg tgtccctcaa 2640 agctctatgg caatcggtgt atccgtgtct tacttatatc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca atgcaattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggccatc cgtataatat t 2781 //