ID   KC282643; SV 1; circular; genomic RNA; STD; VRL; 1359 BP.
XX
AC   KC282643;
XX
DT   20-FEB-2013 (Rel. 115, Created)
DT   20-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Sida yellow vein China alphasatellite clone R8, complete sequence.
XX
KW   .
XX
OS   Sida yellow vein China alphasatellite
OC   Viruses; Alphasatellitidae; Geminialphasatellitinae;
OC   unclassified Begomovirus-associated alphasatellites.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-1359
RX   DOI; 10.1007/s11262-013-0888-0.
RX   PUBMED; 23397078.
RA   Shahid M.S., Yoshida S., Khatri-Chhetri G.B., Briddon R.W., Natsuaki K.T.;
RT   "Complete nucleotide sequence of a monopartite Begomovirus and associated
RT   satellites infecting Carica papaya in Nepal";
RL   Virus Genes 46(3):581-584(2013).
XX
RN   [2]
RP   1-1359
RA   Shahid M.S., Yoshida S., Khatri-Chhetri G.B., Briddon R.W., Natsuaki K.T.;
RT   ;
RL   Submitted (02-DEC-2012) to the INSDC.
RL   Tokyo Nodai, Tokyo University of Agricultrue Japan, 1-1-1 Sakuragaoka,
RL   Setagaya-Ku, Tokyo, Japan, Tokyo 156-8502, Japan
XX
DR   MD5; fa5310a25ef56078905dd5f5ff227be4.
DR   EuropePMC; PMC3917438; 24424499.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1359
FT                   /organism="Sida yellow vein China alphasatellite"
FT                   /host="Carica papaya"
FT                   /mol_type="genomic RNA"
FT                   /country="Nepal"
FT                   /isolation_source="leaves"
FT                   /collected_by="B.J. Pudashini and K.T. Natsuaki"
FT                   /collection_date="25-Nov-2010"
FT                   /clone="R8"
FT                   /db_xref="taxon:1293961"
FT   gene            79..1026
FT                   /gene="REp"
FT   CDS             79..1026
FT                   /codon_start=1
FT                   /gene="REp"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:M1LCF7"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:M1LCF7"
FT                   /protein_id="AGF37249.1"
FT                   /translation="MPALKAQWWCFTVFFVSATAPDLVPLFENTHVSYACWQEEESPTT
FT                   RRRHLQGYLQLKGQRTLNQVKAIFGDLKPHLEKQRARKTDEARDYCMKEETRVSGPFEF
FT                   GEYCPAGSHKRRQRELVIRSPVRMAEENPSVFRRVKAKIAEEDFQKSAPEIQISNLKSW
FT                   QSRLQTLLYRDPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVAYQYIG
FT                   QLGNNIVFDIPRDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLIKCIHVVVMSNFLPDF
FT                   EKISVDRVHVIPCRPCGVCLKHHNINDNCDDYID"
XX
SQ   Sequence 1359 BP; 414 A; 266 C; 307 G; 372 T; 0 other;
     accccgcctc gagaccccga gttagagacc tgtccgtaca tttttccttc ttctcttata        60
     ttattcctct gagtaaacat gcctgccctc aaagctcaat ggtggtgttt cactgtcttc       120
     ttcgtgtccg ctacggctcc tgatttggtg cccctgttcg agaacacgca cgttagttac       180
     gcctgctggc aagaggaaga gtctcccacg actcgacgtc gccacctgca ggggtatctc       240
     caattgaagg gtcagaggac cttgaaccag gtgaaggcaa tatttgggga tttgaagccc       300
     catcttgaga aacagcgagc tcgtaagacc gacgaggctc gcgattactg tatgaaagag       360
     gaaactaggg tttccggccc ctttgaattt ggggagtact gtcctgctgg ttctcacaaa       420
     cgccgacaaa gggaactcgt aattcgatct ccggtgagaa tggcagagga aaatccgtct       480
     gtcttccgac gagtcaaggc aaagattgct gaggaagact tccagaagag cgcgcctgag       540
     attcaaattt caaatttgaa atcttggcaa tcgcgcctac agacgctcct gtatagggac       600
     ccagatgacc gcactatctt ctgggtttac ggaccggatg gtggggaagg gaaatccacc       660
     tttgccagag acctgtacag aagtgggtcc tggttctata cacgtggagg atctgcagat       720
     aatgtagctt accagtacat aggtcaatta ggaaataata ttgtatttga tatccctcgt       780
     gataagaagg attatctaca atacagttta atagagatgt ttaaggatag attaatagtt       840
     agtaataagt acgagcctct tatggcaccc ttaattaaat gtattcatgt agttgtaatg       900
     tctaattttc ttccagactt tgagaaaatt agcgttgata gagtccatgt aatcccatgt       960
     agaccatgtg gtgtttgcct taaacaccat aatattaatg ataattgtga tgattatatt      1020
     gattaaataa ttttgtttct ttaataaaag aaagaatgaa atgaaaaaaa ataaacgaac      1080
     aatatccatc cttattcatt tgaataataa gtgccgcgca gcggcattca aaaaaataaa      1140
     taaaaaaaaa taaaaaatat gtctacaaaa acgacgtcgt actcataaaa acatatttgg      1200
     gtctaaaaca taaatatgtg aaacttgcgt gcttgcggaa caaagactga ggaagatgcg      1260
     gttaagcgga gtaaatatga taagtcttca ggggtatgcg cttgcaatta atgaggtctc      1320
     ttggctataa ataacacgtc acgaggcggg tgtagtatt                             1359
//