ID KC261975; SV 1; linear; genomic RNA; STD; VRL; 4770 BP. XX AC KC261975; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-18 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4770 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4770 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 7c8caa0eeeaf330e6e186d1badacd183. XX CC GenBank Accession Numbers KC261974-KC261976 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-18. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4770 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="Chrysanthemum" FT /isolate="TSWV-18" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Oct-2010" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RUT4" FT /protein_id="AGM53712.1" FT /translation="MLTLFGNKGSSKSTRKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTLENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1279..4686) FT /gene="Gn-Gc" FT CDS complement(1279..4686) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RVB9" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RVB9" FT /protein_id="AGM53713.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASVQRKAILETLANLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASVTFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETEHGYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAAHLSIDNLVKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFLLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLLCGQGLSCILEFSSDLTFSTAISIDVCSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDIFVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4770 BP; 1537 A; 845 C; 847 G; 1541 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 caaggggtct tctaagtcta ccagaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggtaat gttgaagtct ctaagccgtg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagaaggaa catcttcttt 300 tggaacctat gaatcagatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctggtcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataac actctagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaagggaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaatg 1020 tcacttattt aagcttagat ttctgttaat tttgcatttt aaatcaaaaa ccaaaacaaa 1080 aaacaaaaaa agaaaaaaca aaaaatcaaa aacaaaaaac aaaaacaaaa taaggctgaa 1140 aagccaaact ttggtccgaa gactcttttt gttgtttttt gtttatttgt attttttgtt 1200 tgttttttgt ttgttttata tatacataat ctgactaatg tagaagattg aatcaaattt 1260 agcctgtgat aagcagactc agacaaggtg agagaaatcc ataggtggcc ttcgtcttgt 1320 cattgtatct ttcatcaaca taggggcttt gatctcagaa tcatcatcat cctctatctt 1380 ggatctagat ttataagatt cattcttgac atatccttta caaatggttg ttagaataga 1440 acagaaataa atcacaagga aaatgaatgc aataagcaat atcactctga tagtatcaaa 1500 aaatgaacca aaataacttg caatgaaatt gaatgggctt ttaatataat cccagaagcc 1560 ccatgctgaa gaatcagaat tatattgttg ttcttcatga gcatactcat cattttgatc 1620 tattatgttc tctggttctt ctacaataac attattgacc agaacttcca caaaaatatc 1680 cggattgcct tctgggtaca acgtcatttt cttcttgtct ggattagcag aacaaaacat 1740 tgttatgttg tatttattag atcctttttt aacagccagc tgataagtag atagagagca 1800 aacatctata gaaattgcag tagaaaatgt caaatctgag gaaaattcta aaatgcaaga 1860 taaaccttga ccgcatagaa gacagccgtt gcaatttaaa cttgttgaag ttatggaagg 1920 tcttttagga gcaactttaa aaagatcaga tggaagatca acgacaatct taagttttcc 1980 taaactgaaa gctttttcca agaaaaaact agagaagtct ttaaaactga cgggaatatc 2040 tgatatttgc tctaaaccag atctaaatct gtatgtgtca tatccgcatg ttttaatagt 2100 gattgatttt ttccctattg ctgcacaatc ccaagacatg tcatcacctt ctagagtttt 2160 cttagtaaaa ataggcactc catcatgagt caattgtggg tgaccaaaca ttttcacagg 2220 atcattcaag tttgcaatat ttccagaata aatatggctg tcaggtccat gagctatcag 2280 ttcacctata gtgataccat cattgtgcaa atctgcttgt atatcagctt gaaacaaggc 2340 attttcataa ggaacctctt cagtaatcct tgagcactga cctcctaaaa tgccagaaat 2400 acaaacatct gccactatag ttgattttag tactgaataa attctgtatg atttatccat 2460 gtcatagata ttccgacaga atccgcatgt agcaccttca ttaattgcaa aacaccaagc 2520 ttcttcacat ccccaataag aagttggtgt tatacaaaaa tcttggaaac cagttaaagc 2580 ttgatttttt ctgcaagtgt cacagtttcc tgtacaagtg gaataaaaat ctgtgtgagt 2640 gctttggata ggagctgttg tgtatttttc tgacacttca taatgaattc ccacactttt 2700 gatataaatc acaaattttt ttgctgtttc tgaggtctta tcatttaaca agaatatagt 2760 ccctcctcct cctaaaagag attgttctat catgtatcta tatttcccgt ctacaacaga 2820 atcaaagatc aatgattgtc taggcagaat gttctctggt atgcttgttt cgttcttgtt 2880 tagagaatct ccagcgatca ttccagaaat tttgtctgta cgattataag aatctattat 2940 accattcctc aatctcttag cctcatacag accaaccgat gttaacccta aagagcttcc 3000 tgtataatct gaaaacccat tatacaaagg tttgttccga aataaatcta ggtactcaca 3060 acccagtctg cattttacaa gattatcaat agataggtgt gcagcacaat tctggttttc 3120 tatgcaatca ttaggacctt ctataacaat gttagtgcca aagatacttt ctataatctt 3180 atcttctttc acattacagt aacattgatc tttttctggg catttttcaa atttgcttgt 3240 aaccaaaaat ggacagcctg gaacataaaa acatccactc aaacattggg tagtttgagc 3300 catagacatg ggcatttgag acaaaatgat caaacctatt aagatttcag tcacaaattt 3360 caacaaacta aagctcagct tagtgttcac tattagatgg aaccattcca tgctagtcca 3420 cttgtgtttg ttgtagccat gttctgtttc tttggacagt atgggacact ctgaagaatg 3480 ttcttttgaa gctttgcttt tgttgcagat gcaaatttta gtacattcat gtgtgattat 3540 gcacaaattg ccacagttag aacatttaaa tggaaaatat ttccataagc aatttataag 3600 caacaaaata gggtatgtga tcaagcctat aagatcatac cagagaaaga ggggtttggt 3660 tgtcttgttt actagccacc ggatagggaa atagatcagc aaagctatca atattaatct 3720 tatccaagaa aaattgatgc aggctgtttg tttataaatg ctttttgaat atttgattat 3780 acaatctcta actcttttgt ttgtttttgg tattttagct gatttgtcac cgcacaagag 3840 attgtgctca ccatccagca tttcttcagt aaaagtgacg cttgctgatc cagaaaagga 3900 tatgaccttg tgttccacat tttcaccagg cttttttatc aaataaccca tgatcttctc 3960 agggctagtg atgctaacag tatagggatt ggcaaagttc gatttagtta ttttgcagtc 4020 accagataac tttacagttt gtaatgatac tgttccatta gtggggtacg agttataagt 4080 tataggataa ttatcttgtg ttaagctttc tgaaataaag aattttgttc caactgaaaa 4140 atgccttttg ttgtcaagtt tggtaatggg aataacaggg actttggaga atctctttgg 4200 cagatttaaa gaattgtcac atttttctaa accttccgct gaatcagaaa cacaggaata 4260 tatgacacca ttattttcca cttgataata aacattataa gtggatatcc cttttatctc 4320 acattttaat gaagaagcat tcaagcagtt gttaggaaga tctgagacag agattgtttt 4380 ttgcgtagtt gactcagcaa aaatagggat ggttgattct tcttctcgta tctgacgggt 4440 tccaggggtc tgagattcta gcatcagatt agctaaagtc tccaagatag ccttgcgttg 4500 aaccgatgca gcggtgggta cttcattctc agcagaatca tcataaacct caggatggtc 4560 tccacgaatt atttctactt tggcatctgt ggctctgaag atcaagaatg ccaacaagac 4620 agaactcagg gcaattgtga aaagactcac ttttaccact agttctagta gttttaaaat 4680 tctcatctta gacgtctgct cagattataa tggttatatg attaattgaa agatgtctgg 4740 attaaggttt ttgtttgcac tgattgctct 4770 //