ID KC261972; SV 1; linear; genomic RNA; STD; VRL; 4828 BP. XX AC KC261972; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-17 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4828 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4828 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; e651561dd03153d7d1b6af44a282165a. XX CC GenBank Accession Numbers KC261971-KC261973 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-17. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4828 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="Stellaria media" FT /isolate="TSWV-17" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="May-2010" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RUT9" FT /protein_id="AGM53717.1" FT /translation="MLTLFGNKRPSRSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDASKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1337..4744) FT /gene="Gn-Gc" FT CDS complement(1337..4744) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RVC3" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RVC3" FT /protein_id="AGM53718.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EIYDDSAENEVPTAASIQREAILETLTNLMLESRTPGTRQIREEKSTIPISTEPATQKT FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKIAKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTHECTKVCICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILIGLVILSQM FT PMSMAKTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQDCIARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQADLHNDGITIGELIALGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSVTIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVVPKKPSITSTSL FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSADP FT DKRKMTLYPEGNPDMSVEVLVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD FT DEPEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4828 BP; 1549 A; 868 C; 844 G; 1567 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaacta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 caagaggcct tctaggtctg ccggaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggcaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttaac 240 caaagccatg gatgcatcca aaggaaagat actgttgaac actgagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgctagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 aaagcaaaat gctaataagg ttatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg 600 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt ctattccaaa 660 gatgaacaac accccagaaa actgttgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaaaggggtt tcttttggta gcgtcatgta ttcctggaca aaagagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtatggt tatacctcta aacagggcca ttagagctag 840 gtctcaagca ttcattgaag cctgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgacagtg ttgctcagtt atcctttgat gaaatatagt ttttaaaaac 1020 acttatttaa gcttaaattt ctgtctattt tgcatttcga atccaaaaac ccgaaacaaa 1080 aaacaaaaaa caaaaaaaga aaaaacaaac aaaaaaatca aaccaaaaaa caaaaacaaa 1140 ataaggctga aaagccaaac tttggtccga agactctttt tgttgttttt tgtttatttg 1200 tatttttttg tttgttgttt tttgtttatt tcatatttgc tttttattag tcaatgattg 1260 attctaaaga tttttatata tataaaatcc tgctaatata gaagattgaa tcaaatttaa 1320 tctgtgacaa gcatcctcag acaaggtgag agaaatccat aggtggcctt cgtcttgtca 1380 ttgtatcttt cattaacata ggggctttga tctcaggttc atcatcatcc tctatcttgg 1440 atctagattt ataagattta tgctttacat atcctttaca aatggatgtc agaatagaac 1500 agaaataaat cacaaggaaa atgaatgcaa taagcaatat cactctgata gtatcaaaaa 1560 atgagccaaa gtaacttgca atgaaattga atggactttt aatataatcc cagaagcccc 1620 atgcagaaga atcagaatta tattgttgtt cttcatgagc atactcatca ttttgatcta 1680 ttatattctc tggttcttct ataataacat tattaaccaa aacttccaca gacatatctg 1740 gattgccttc tggatacagt gtcattttcc ttttgtccgg gtcggctgaa caaaacattg 1800 ttatattgta tttattagat ccttttttaa cagccagctg ataagtagat aaagagcaag 1860 cgtctataga aattgcagta gaaaatgtca aatctgagaa aaattctaaa atgcaagata 1920 aaccttggcc gcatagaaga cagccgttgc aatttaagct tgttgaagtt atggaaggtt 1980 ttttaggaac aactttaaaa agatcagatg gaagatcaac tacaattttc agtttcccta 2040 aactaaaaga tttttccagg aaaaaactag agaaatcttt gaaactaaca ggaatatctg 2100 atatttgctc taaaccagat ctaaacctgt atgtgtcata tccacatgtt ttaatagtga 2160 ctgatttttt tcctattgct gcacaatccc aagacatgtc atctccttct agagttttct 2220 tagtaaaaat aggcactcca tcatgggtca attgcggatg accaaacatt ttcacaggat 2280 cattcaagtt tgcaatattt ccagagtaaa tatggctgtc aggtccaaga gctattagtt 2340 cacctatagt gataccatca ttatgcaaat ctgcctgtat atcagcttga aacaatgtat 2400 tttcataagg aacttcttca gtaatccttg agcattgacc tcccaaaata ccagaaatac 2460 aaacatctgc tactatagtt gatttgagca ctgaataaat tctatatgat ttgtccatat 2520 cataaatatt tcgacagaat ccgcatgtag caccctcatt aattgcaaaa caccaagctt 2580 cttcacatcc ccaataagaa gttggtgtta tacaaaaatc ttggaaacct gttaaagctt 2640 gatttttcct gcaagtatcg cagtttcctg tacaagtgga ataaaaatcc gtatgggtgc 2700 tttggatggg agctgttgta tatttttctg acacttcata atgaattccc acacttttga 2760 tataaatcac aaattttttg gctgtttctg aggtcttgtc atttagcata aatatagttc 2820 ctcctcctcc caaaagagat tgttctatca tatatctata tttcccgtct acaacagaat 2880 caaagattaa tgattgcctg ggcaggatgt tctctggtat gcttgtttca tttttgtcta 2940 aagagtctcc tgcaatcatt ccagaaattt tgtctgtacg attataggaa tctattatac 3000 catttctcaa tctcttagcc tcatacagac caactgatgt taaccctaaa gagcttcctg 3060 tataatcaga aaacccattg tacaaaggtt tgttctgaaa taaatctagg tattcgcaac 3120 ctaatctgca ttttataaga ttatcaatag atgggcgtgc aatgcaatcc tggttctcta 3180 tgcaatcatt agggccttct ataacaatat tagtgccaaa gatactttct atgatcttgt 3240 cttcttttac attgcagtaa cattgatctt tttcagggca tttttcaaat ttgcttgtaa 3300 ccaaaaatgg acagcctgga acataaaagc atccactcaa acattgggtt gttttagcca 3360 tagacatggg catctgagac aaaatgacta aacctatcaa aatttcggtc acaaatttta 3420 gcaaactcaa gctcagctta gtgttcacta ttagatggaa ccattccatg ctagtccact 3480 tatgtttgtt gtagtcatga tctgtctctt tggataatat gggacactct gaagaatgct 3540 cttttgaagc tttgcttttg ttgcaaatgc agactttagt acactcatgt gtgactatgc 3600 acaaattgcc gcagttagaa catttaaatg ggaaatattt ccataagcaa tttatgagca 3660 ataagacagg gtatgtgatc aagcccataa gatcatacca gagaaagaga ggtttagtcg 3720 tcttgttcac taaccatcgg atagggaaat agatcaacaa agctatcaat atcaatctta 3780 tccaagaaaa attgatgcag gctgtttgct tataaatact ttttgaatat ttgattatgc 3840 aatctctgac tcttttgttt gtttttggta ttttagctga tttgtcaccg cacaagagat 3900 tgtgttcacc atccaacatt tcctcggtaa aagtgatact tgctgatcca gaaaaagcta 3960 taaccttgtg ttccacattt tcaccaggtt tttttatcaa ataacccatg atcttctcag 4020 ggctagtgat gctcacagta tagggatttg caaagtttga tttagctatt ttgcagtcac 4080 cagataactt tacagtttgt aatgatactg ttccattagt ggggtatgag ttgtaagtta 4140 taggataatt atcttgtgtc aggctttctg aaatgaagaa ttttgttcct actgaaaaat 4200 gtcttttgtt gtcaagtttg gtaataggaa taactgggac tttggagaat ctctttggca 4260 aatttaaaga attatcacat ttttctaaac cttctgctga atcagaaaca caggaatata 4320 tgacaccatt gttttcaact tgataataaa cattataagt agatatccct tttatctcac 4380 attttaatga ggaagcattc aagcagttgt tgggaaggtc caaaacagag attgtttttt 4440 gcgttgctgg ctcagtggaa atagggatgg ttgatttttc ttctcgtatc tgacgggttc 4500 caggagtccg agattctagc atcagattag ttaaagtctc caagatagct tcgcgttgaa 4560 tcgatgcagc agtgggtacc tcattctcag cagaatcatc ataaatctca ggatgatctc 4620 cacgaattat ttctacttta gcatctgtgg ctctgaagat caagaatgcc aacaaaacag 4680 aactcagggc aattgtgaaa agactcactt ttaccactag ttctagtagt tttagaattc 4740 tcatcttaga tgtctaccca gattacaatg gttgtgtgat taatttcaag atgtctggat 4800 taaggttttt gtttgcactg attgctct 4828 //