ID KC261970; SV 1; linear; genomic RNA; STD; VRL; 2973 BP. XX AC KC261970; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-16 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2973 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-2973 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 58d259fa852e77d7c0bebb478a58632a. XX CC GenBank Accession Numbers KC261968-KC261970 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-16. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2973 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="tomato" FT /isolate="TSWV-16" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Oct-2010" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:R9RVF2" FT /protein_id="AGM53720.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHQIPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTTGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI FT SEAYDSGSK" FT gene complement(2046..2822) FT /gene="N" FT CDS complement(2046..2822) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q1PBV3" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q1PBV3" FT /protein_id="AGM53721.1" FT /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2973 BP; 953 A; 547 C; 469 G; 1004 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cgcaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttacgagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaacc cagttgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 taatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc ctaacagaaa 660 tgtccatgaa tggctgtact gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtaa aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagagttcca aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata atagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcaccagatc ccaattcgta aatgtcaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactacagga aagttagatc taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtctacca tctaacacac aaactatgtc 1320 ttacttagac agcatccaga tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga tctcggaagc atatgattca ggatcaaaat aatcttgctg 1500 tgtccagctt tccctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tattttgtaa tttcttttga atttctcctg tttaatagaa accataaaaa taaaataaaa 1620 ataaaaataa caatcaaaat gaaacaaaaa tcaaaaaatg aacaaaaatc aaacaaaaat 1680 caaaaaatga aataaaaaca acaaaaaaat aaaaaacaaa aaaccaaaaa agatcccgaa 1740 agggacaatt ttggccaaat ttgggttttg tttttgtttt ttgttttttg ttttttgttt 1800 ttattttatt tttattttta tttatttatt ttattttatt tttatttata tttttatttt 1860 tattttcatt ttatgttttt tgttgttttt gttattttgt ttattattaa gcacaacaca 1920 cagaaagcaa actttaatta aacacactta ttttaaattt aacacactaa gcaagcacga 1980 gcaataaaga taaagaaagc tttatatatt tataggcttt tttataattt aacttacagc 2040 tgcttttaag caagttctgc aagttttgcc tgttttttaa ccccgaacat ttcatagaac 2100 ttgttaagag tttcactgta atgttccata gcaatacttc ctttagcatt aggattgctg 2160 gagctaagta tagcagcata ctctttccct ttcttcacct gatcttcatt catttcaaat 2220 gctttgcttt ttagcacagt gcaaactttt cctagggctt ccctggtgtc atactttttt 2280 ggatcgatcc ctaggtcttt gtattttgca tcctgatata tagccaagac aacactgatc 2340 atctcaaagc tatcaaccga agcaataaga ggtaagctac ctcccagcat tatggcaagc 2400 ctcacagact ttgcatcatc aagaggtaat ccataggctt ggatcaaagg gtgagaagca 2460 atcttagatt tgatagtatt gagattctca gaattcccgg tttcctcgac aagcctgacc 2520 ctgatcaagc tatcaagcct tctgaaggtc atgtcagtgg ctccaatcct gtctgaagtt 2580 ttctttatgg taattttacc aaaagtaaaa tcactttgct taataacctt cattatactc 2640 tgacgattct tcaggaatgt cagacatgaa ataatgctca tcttcttgat ctggtcaagg 2700 ttttccagac aaaaagtctt gaagttgaat gctaccagat tctgatcttc ctcaaattca 2760 agatctttgc tttgtgtcaa caaagcaaca atgttttcct tagtgagctt aaccttagac 2820 atgatgatcg tggaagttgt tatatgcttt gaccgtatgt aattcaaggt gcgaaagtgc 2880 aactctgtat tccgcagtcg tttcttaggg ttttaatgtg atgatttgta agactgagtg 2940 ttaaggtttg aataaaattg acacaattgc tct 2973 //