ID KC261969; SV 1; linear; genomic RNA; STD; VRL; 4788 BP. XX AC KC261969; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-16 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4788 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4788 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; e6ab06a500dde7187b491e1fd73f7498. XX CC GenBank Accession Numbers KC261968-KC261970 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-16. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4788 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="tomato" FT /isolate="TSWV-16" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Jun-2010" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RUU6" FT /protein_id="AGM53722.1" FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVLYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1297..4704) FT /gene="Gn-Gc" FT CDS complement(1297..4704) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RVC7" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RVC7" FT /protein_id="AGM53723.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIMESIFGTNIVIEG FT PNDCIENQDCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNSTDKISGTIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGAIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDAIRVILLIASIFLAIYFCSVLTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4788 BP; 1546 A; 850 C; 847 G; 1545 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagtaa 120 taaggggtct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 cggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctagtcg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaaaggggtt tcttttggta gtgtcttgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagcttaaat ttctgttaat tttgcatttt taaatcaaaa aacaaaacaa 1080 aaacaaaaaa caaaaaagaa aaacaaaaaa caaaaaaatc aaaaaaagaa aaaacaaaaa 1140 caaaataagg ctgaaaagcc aaactttggt ccgaagactc tttttttgtt gttttttgtt 1200 tatttgtatt ttttgtttgt ttttttgttt attttatata tacataatct gactaatgta 1260 gagaattgaa tcaaatttag cctgtgacaa gcagcctcag acaaggtgag agaaatccat 1320 aggtggcctt cgtcttgtca ttgtatcttt cattaacata ggggctttga tctcagaatc 1380 atcgtcatcc tctatcttgg atctagattt ataagattca ttcttgacat atcctttaca 1440 aatggttgtt agaacagaac agaaataaat cgcaaggaaa atggatgcaa tgagcaatat 1500 cactctgata gcatcaaaaa acgagccaaa ataacttgca atgaaattga atgggctctt 1560 aatataatcc cagaagcccc atgctgaaga atcagaatta tattgttgtt cctcatgagc 1620 atactcatca ttttgatcta ttatgttctc tggttcttct acaacaacat tgttgaccag 1680 aacctccaca gaaatatctg gattgccttc tggatacaac gtcatttttt tcttgtccgg 1740 attagcagaa caaaacattg ttatgttgta tttatttgat ccttttttaa cagccagttg 1800 ataagtagat agagagcaag catctataga aattgaagta gaaaatgtca aatccgagaa 1860 aaattctaaa atgcaagata aaccttgacc gcatagaaga cagccgttgc aatttaatct 1920 tgttgaagtt atggaaggtc tcttaggagc aattttaaaa agatcagatg gaagatcaac 1980 gacgatcttg agtttgccta aactgaaagc tttttccaag aaaaaactag agaaatcctt 2040 gaaactaaca ggaatatctg atatttgctc taaaccagat ctaaatctgt atgtatcata 2100 tccgcatgtt ttaatagtga ttgatttttt ccctattgct gcacaatccc aagacatgtc 2160 atctccttct agagttttct tagtaaaaat aggcactcca tcatgagtca attgtgggtg 2220 accaaacatt ttgacaggat cattcaagtt tgcaatattt ccagaataaa tatggccgtc 2280 aggtccatga gctatcagtt cacctatagt gataccatca ttgtgcaaat ctgcttgtat 2340 atcagcttga aacaaggcat tttcataagg aacctcttca gtgatccttg agcactgacc 2400 tcctaaaata ccagaaatac aaacatctgc cactatggtt gattttagca ctgaataaat 2460 tctgtatgat ttatccatgt catagatatt ccgacagaat ccacatgtag caccttcatt 2520 aattgcaaaa caccaagctt cttcacatcc ccaataagaa gttggtgtta tacaaaaatc 2580 ttggaaacct gttaaagctt gattttttct gcaagtgtca cagtttcctg tgcaagttga 2640 ataaaaatct gtgtgagtgc tttggatagg agctgttgtg tatttttctg acacttcata 2700 atgaattccc acacttttga tataaatcac aaattttttg gctgtttccg aggttttatc 2760 attcaacatg aatatagccc ctcctcctcc taaaagagat tgttctatca tgtatctata 2820 tttcccatct acaacagaat caaagatcaa tgattgtcta ggcagaatgt tctctggtat 2880 gcttgtttca tttttgttta gagagtctcc tgcaatcgtt ccagaaattt tgtctgtact 2940 attataagaa tctattatac cattcctcaa tctcttagct tcatacagac caaccgacgt 3000 caaccctaaa gagcttcctg tataatctga aaacccgtta tacaaaggtt tgtttctaaa 3060 taaatctagg tattcgcaac ctaatctgca ttttataaga ttatcaatag atgggtgtgc 3120 aacgcaatcc tggttctcta tgcaatcatt aggaccttct ataacaatgt tagtgccaaa 3180 gatactttcc ataatcgtat cttcttttac attacagtaa cattgatctt tttcagggca 3240 tttttcaaat ttgcttgtaa ccaaaaaagg acagcctgga acataaaaac atccacttaa 3300 acattgggta gtttgagcca tagacatggg catttgagac aaaatgacca aacctattaa 3360 gatttcagtc acaaatttca gcaaactgaa gctaagctta gtgttcacta ttagatggaa 3420 ccattccatg ctagtccact tatgtttgtt gtagtcatga tctgtttctt tggacaatat 3480 gggacactct gaagaatgtt cttttgaggc tttgcttttg ttgcagatgc aaattttagt 3540 acattcatgt gtgattatgc acaaattgcc acagttagaa catttaaatg gaaaatattt 3600 ccataagcaa tttatgagca acaaaatagg gtatgtgatc aagcctataa gatcatacca 3660 gagaaaaagg ggtttggttg tcttgtttac taaccaccgg atagggaaat agatcaacaa 3720 agctatcaat attaatctta tccaagaaaa attgatgcag gctgtttgtt tataaatgct 3780 ttttgaatat ttgattatgc aatctctaac tcttttgttt gtttttggta ttttagctga 3840 tttgtcaccg cacaagagat tgtgctcacc atccaacatt tcctcagtaa aagtgatgct 3900 tgctgatcca gaaaaagata tgaccttgtg ttccacattt tcaccaggct tttttatcaa 3960 ataacccatg atcttctcag ggctagtgat gctaacagta tagggattag caaagtttga 4020 tttagttatt ttgcagtcgc cagataactt cacagtttgt aatgatactg ttccattagt 4080 agggtacgag ttataagtta taggataatt atcttgtgtc aggctttctg aaatgaagaa 4140 ttttgtccca actgaaaaat gccttttgtt gtcaagtttg gtaatgggaa taactgggac 4200 tttagagaat ctttttggca gatttaaaga attgtcacat ttttctaaac cttctgctga 4260 atcagaaaca caggaatata tgacaccatt attttccact tgataataaa cattataagt 4320 ggatatccct tttatctcac attttaatga agaagcattc aagcagttgt tgggaagatc 4380 cgagacagag attgtttttt gcgtagttga ttcagcaaaa atagggatgg ttgattcttc 4440 ttctcgtatc tggcgggttc caggagtctg agattctagc atcagattag ttaaagtctc 4500 caagatagcc ttgcgttgaa ttgatgcagc agtgggtact tcattctcag cagaatcatc 4560 ataaacctca ggatggtctc cacgaattat ttctactttg gcatctgtgg ctctgaagat 4620 caagaatgcc aacaagacag aactcagggc aattgtgaaa agactcactt ttaccactag 4680 ttctagtagt tttaaaattc tcatcctaga cgtctgctca gattataatg gttatatgat 4740 taatttcaag atgtctggat taaggttttt gtttgcactg attgctct 4788 //