ID KC261966; SV 1; linear; genomic RNA; STD; VRL; 4829 BP. XX AC KC261966; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-12 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4829 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4829 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; b0a7e0b3a0ba2e3a757cd8f74b0be5bc. XX CC GenBank Accession Numbers KC261965-KC261967 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-12. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4829 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="lettuce" FT /isolate="TSWV-12" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="May-2010" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RUT9" FT /protein_id="AGM53727.1" FT /translation="MLTLFGNKRPSRSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDASKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1338..4745) FT /gene="Gn-Gc" FT CDS complement(1338..4745) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RVD1" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RVD1" FT /protein_id="AGM53728.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EIYDDSAENEVPTAASIQREAILETLTNLMLESRTPGTRQIREEKSTIPISTEPATQKT FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKIAKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTHECTKVCICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILVGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQDCIARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQADLHNDGITIGELIALGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSVTIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVVPKKPSITSTSL FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSADP FT DKRKMTLYPEGNPDMSVEVLVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD FT DEPEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4829 BP; 1548 A; 869 C; 846 G; 1566 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaacta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 caagaggcct tctaggtctg ccggaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggcaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttaac 240 caaagccatg gatgcatcca aaggaaagat actgttgaac actgagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgctagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 aaagcaaaat gctaataagg ttatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg 600 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt ctattccaaa 660 gatgaacaac accccagaaa actgttgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaaaggggtt tcttttggta gcgtcatgta ttcctggaca aaagagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtatggt tatacctcta aacagggcca ttagagctag 840 gtctcaagca ttcattgaag cctgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgacagtg ttgctcagtt atcctttgat gaaatatagt ttttaaaaac 1020 acttatttaa gcttaaattt ctgtctattt tgcatttcga atccaaaaac ccgaaacaaa 1080 aaacaaaaaa caaaaaaaga aaaaacaaac aaaaaaatca aaccaaaaaa caaaaacaaa 1140 ataaggctga aaagccaaac tttggtccga agactctttt tgttgttttt tgtttatttg 1200 tatttttttt gtttgttgtt ttttgtttat ttcatatttg ctttttatta gtcaatgatt 1260 gattctaaag atttttatat atataaaatc ctgctaatat agaagattga atcaaattta 1320 atctgtgaca agcatcctca gacaaggtga gagaaatcca taggtggcct tcgtcttgtc 1380 attgtatctt tcattaacat aggggctttg atctcaggtt catcatcatc ctctatcttg 1440 gatctagatt tataagattt atgctttaca tatcctttac aaatggatgt cagaatagaa 1500 cagaaataaa tcacaaggaa aatgaatgca ataagcaata tcactctgat agtatcaaaa 1560 aatgagccaa agtaacttgc aatgaaattg aatggacttt taatataatc ccagaagccc 1620 catgcagaag aatcagaatt atattgttgt tcttcatgag catactcatc attttgatct 1680 attatattct ctggttcttc tataataaca ttattaacca aaacttccac agacatatct 1740 ggattgcctt ctggatacag tgtcattttc cttttgtccg ggtcggctga acaaaacatt 1800 gttatattgt atttattaga tcctttttta acagccagct gataagtaga taaagagcaa 1860 gcgtctatag aaattgcagt agaaaatgtc aaatctgaga aaaattctaa aatgcaagat 1920 aaaccttggc cgcatagaag acagccgttg caatttaagc ttgttgaagt tatggaaggt 1980 tttttaggaa caactttaaa aagatcagat ggaagatcaa ctacaatttt cagtttccct 2040 aaactaaaag atttttccag gaaaaaacta gagaaatctt tgaaactaac aggaatatct 2100 gatatttgct ctaaaccaga tctaaacctg tatgtgtcat atccacatgt tttaatagtg 2160 actgattttt ttcctattgc tgcacaatcc caagacatgt catctccttc tagagttttc 2220 ttagtaaaaa taggcactcc atcatgggtc aattgcggat gaccaaacat tttcacagga 2280 tcattcaagt ttgcaatatt tccagagtaa atatggctgt caggtccaag agctattagt 2340 tcacctatag tgataccatc attatgcaaa tctgcctgta tatcagcttg aaacaatgta 2400 ttttcataag gaacttcttc agtaatcctt gagcattgac ctcccaaaat accagaaata 2460 caaacatctg ctactatagt tgatttgagc actgaataaa ttctatatga tttgtccata 2520 tcataaatat ttcgacagaa tccgcatgta gcaccctcat taattgcaaa acaccaagct 2580 tcttcacatc cccaataaga agttggtgtt atacaaaaat cttggaaacc tgttaaagct 2640 tgatttttcc tgcaagtatc gcagtttcct gtacaagtgg aataaaaatc cgtatgggtg 2700 ctttggatgg gagctgttgt atatttttct gacacttcat aatgaattcc cacacttttg 2760 atataaatca caaatttttt ggctgtttct gaggtcttgt catttagcat aaatatagtt 2820 cctcctcctc ccaaaagaga ttgttctatc atatatctat atttcccgtc tacaacagaa 2880 tcaaagatta atgattgcct gggcaggatg ttctctggta tgcttgtttc atttttgtct 2940 aaagagtctc ctgcaatcat tccagaaatt ttgtctgtac gattatagga atctattata 3000 ccatttctca atctcttagc ctcatacaga ccaactgatg ttaaccctaa agagcttcct 3060 gtataatcag aaaacccatt gtacaaaggt ttgttctgaa ataaatctag gtattcgcaa 3120 cctaatctgc attttataag attatcaata gatgggcgtg caatgcaatc ctggttctct 3180 atgcaatcat tagggccttc tataacaata ttagtgccaa agatactttc tatgatcttg 3240 tcttctttta cattgcagta acattgatct ttttcagggc atttttcaaa tttgcttgta 3300 accaaaaatg gacagcctgg aacataaaag catccactca aacattgggt tgtttgagcc 3360 atagacatgg gcatctgaga caaaatgact aaacctacca aaatttcggt cacaaatttt 3420 agcaaactca agctcagctt agtgttcact attagatgga accattccat gctagtccac 3480 ttatgtttgt tgtagtcatg atctgtctct ttggataata tgggacactc tgaagaatgc 3540 tcttttgaag ctttgctttt gttgcaaatg cagactttag tacactcatg tgtgactatg 3600 cacaaattgc cgcagttaga acatttaaat gggaaatatt tccataagca atttatgagc 3660 aataagacag ggtatgtgat caagcccata agatcatacc agagaaagag aggtttagtc 3720 gtcttgttca ctaaccatcg gatagggaaa tagatcaaca aagctatcaa tatcaatctt 3780 atccaagaaa aattgatgca ggctgtttgc ttataaatac tttttgaata tttgattatg 3840 caatctctga ctcttttgtt tgtttttggt attttagctg atttgtcacc gcacaagaga 3900 ttgtgttcac catccaacat ttcctcggta aaagtgatac ttgctgatcc agaaaaagct 3960 ataaccttgt gttccacatt ttcaccaggt ttttttatca gataacccat gatcttctca 4020 gggctagtga tgctcacagt atagggattt gcaaagtttg atttagctat tttgcagtca 4080 ccagataact ttacagtttg taatgatact gttccattag tggggtatga gttgtaagtt 4140 ataggataat tatcttgtgt caggctttct gaaatgaaga attttgttcc tactgaaaaa 4200 tgtcttttgt tgtcaagttt ggtaatagga ataactggga ctttggagaa tctctttggc 4260 aaatttaaag aattatcaca tttttctaaa ccttctgctg aatcagaaac acaggaatat 4320 atgacaccat tgttttcaac ttgataataa acattataag tagatatccc ttttatctca 4380 cattttaatg aggaagcatt caagcagttg ttgggaaggt ccaaaacaga gattgttttt 4440 tgcgttgctg gctcagtgga aatagggatg gttgattttt cttctcgtat ctgacgggtt 4500 ccaggagtcc gagattctag catcagatta gttaaagtct ccaagatagc ttcgcgttga 4560 atcgatgcag cagtgggtac ctcattctca gcagaatcat cataaatctc aggatgatct 4620 ccacgaatta tttctacttt agcatctgtg gctctgaaga tcaagaatgc caacaaaaca 4680 gaactcaggg caattgtgaa aagactcact tttaccacta gttctagtag ttttagaatt 4740 ctcatcttag atgtctaccc agattacaat ggttgtgtga ttaatttcaa gatgtctgga 4800 ttaaggtttt tgtttgcact gattgctct 4829 //