ID KC261963; SV 1; linear; genomic RNA; STD; VRL; 4791 BP. XX AC KC261963; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-10 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4791 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4791 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; b274462f2ac09567b608c0dd6468cd00. XX CC GenBank Accession Numbers KC261962-KC261964 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-10. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4791 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="Stellaria aquatica" FT /isolate="TSWV-10" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Sep-2009" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RW77" FT /protein_id="AGM53731.1" FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVLYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVARLSFDEI" FT gene complement(1300..4707) FT /gene="Gn-Gc" FT CDS complement(1300..4707) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RUV6" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RUV6" FT /protein_id="AGM53732.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCFNCGSLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPKKDQCYCNVKEDTIMESIFGTNIVIEG FT PNDCIENQDCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNSTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGAIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLAHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQHYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIASIFLAIYFCSVLTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4791 BP; 1546 A; 850 C; 849 G; 1546 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagtaa 120 taaggggtct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctagtcg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcttgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcggtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagcttaaat ttctgttaat tttgcatttt taaatcaaaa aacaaaacaa 1080 aaacaaaaaa caaaaaagaa aaacaaaaaa caaaaaaatc aaaaaaagaa aaaacaaaaa 1140 caaaataagg ctgaaaagcc aaactttggt ccgaagactc tttttttgtt gttttttgtt 1200 tatttgtatt ttttgtttgt gttttttttg tttattttat atatacataa tctgactaat 1260 gtagagaatt gaatcaaatt tagcctgtga caagcagcct cagacaaggt gagagaaatc 1320 cataggtggc cttcgtcttg tcattgtatc tttcattaac ataggggctt tgatctcaga 1380 atcatcatca tcctctatct tggatctaga tttataagat tcattcttga catatccttt 1440 acaaatggtt gttagaacag aacagaaata aatcgcaagg aaaatggatg caataagcaa 1500 tatcactctg atagtatcaa aaaacgagcc aaaataactt gcaatgaaat tgaatgggct 1560 cttaatataa tcccagaagc cccatgctga agaatcagaa ttataatgtt gttcctcatg 1620 agcatactca tcattttgat ctattatgtt ctctggttct tctacaacaa cattgttgac 1680 cagaacctcc acagaaatat ctggattgcc ttctggatac aacgtcattt tcttcttgtc 1740 cggattagca gaacaaaaca ttgttatgtt gtatttattt gatccttttt taacagccag 1800 ttgataagta gatagagagc aagcatctat agaaattgaa gtagaaaatg tcaaatccga 1860 gaaaaattct aaaatgcaag ataaaccttg accgcataga agacagccgt tgcaatttaa 1920 tcttgttgaa gttatggaag gtctcttagg agcaatttta aaaagatcag atggaagatc 1980 aacgacgatc ttgagtttgc ctaaactgaa agctttttcc aagaaaaaac tagagaaatc 2040 cttgaaacta acaggaatat ctgatatttg ctctaaacca gatctaaatc tgtatgtatc 2100 atatccgcat gttttaatag tgattgattt tttccctatt gctgcacaat cccaagacat 2160 gtcatctcct tctagggttt tcttagtaaa aataggcact ccatcatgag ccaattgtgg 2220 gtgaccgaac attttgacag gatcattcaa gtttgcaata tttccagaat aaatatggcc 2280 gtcaggtcca tgagctatca gttcacctat agtgatacca tcattgtgca aatctgcttg 2340 tatatcagct tgaaacaagg cattttcata aggaacctct tcagtgatcc ttgagcactg 2400 acctcctaaa ataccagaaa tacaaacatc tgccactatg gttgatttta gcactgaata 2460 aattctgtat gatttatcca tgtcatagat attccgacag aatccacatg tagcaccttc 2520 attaattgca aaacaccaag cttcttcaca tccccaataa gaagttggtg ttatacaaaa 2580 atcttggaaa cctgttaaag cttgattttt tctgcaagtg tcacagtttc ctgtgcaagt 2640 tgaataaaaa tctgtgtgag tgctttggat aggagctgtt gtgtattttt ctgacacttc 2700 ataatgaatt cccacacttt tgatataaat cacaaatttt ttggctgttt ccgaggtttt 2760 atcattcaac atgaatatag cccctcctcc tcctaaaaga gattgttcta tcatgtatct 2820 atatttccca tctacaacag aatcaaagat caatgattgt ctaggcagaa tgttctctgg 2880 tatgcttgtt tcatttttgt ttagagagtc tcctgcaatc attccagaaa ttttgtctgt 2940 actattataa gaatctatta taccattcct caatctctta gcttcataca gaccaaccga 3000 cgtcaaccct aaagagcttc ctgtataatc tgaaaatccg ttatacaaag gtttgtttct 3060 aaataaatct aggtattcgc aacctaatct gcattttata agattatcaa tagatgggtg 3120 tgcaacgcaa tcctggttct ctatgcaatc attaggacct tctataacaa tgttagtgcc 3180 aaagatactt tccataatcg tatcttcttt tacattacag taacattgat cttttttagg 3240 gcatttttca aatttgcttg taaccaaaaa aggacagcct ggaacataaa aacatccact 3300 taaacattgg gtagtttgag ccatagacat gggcatttga gacaaaatga ccaaacctat 3360 taagatttca gtcacaaatt tcagcaaact gaagctaagc ttagtgttca ctattagatg 3420 gaaccattcc atgctagtcc acttatgttt gttgtagtca tgatctgttt ctttggacag 3480 tatgggacac tctgaagaat gttcttttga ggctttgctt ttgttgcaga tgcaaatttt 3540 agtacattca tgtgtgatta tgcacaaact gccacagtta aaacatttaa atggaaaata 3600 tttccataag caatttatga gcaacaaaat agggtatgtg atcaagccta taagatcata 3660 ccagagaaaa aggggtttgg ttgtcttgtt cactaaccac cggataggga aatagatcaa 3720 caaagctatc aatattaatc ttatccaaga aaaattgatg caggctgttt gtttataaat 3780 gctttttgaa tatttgatta tgcaatctct aactcttttg tttgtttttg gtattttagc 3840 tgatttgtca ccgcacaaga gattgtgctc accatccaac atttcctcag taaaagtgat 3900 gcttgctgat ccagaaaaag atatgacctt gtgttccaca ttttcaccag gcttttttat 3960 caaataaccc atgatcttct cagggctagt gatgctaaca gtatagggat tagcaaagtt 4020 tgatttagtt attttgcagt cgccagataa cttcacagtt tgtaatgata ctgttccatt 4080 agtagggtac gagttataag ttataggata attatcttgt gtcaggcttt ctgaaatgaa 4140 gaattttgtc ccaactgaaa aatgcctttt gttgtcaagt ttggtaatgg gaataactgg 4200 gactttagag aatctttttg gcagatttaa agaattgtca catttttcta aaccttctgc 4260 tgaatcagaa acacaggaat atatgacacc attattttcc acttgataat aaacattata 4320 agtggatatc ccttttatct cacattttaa tgaagaagca ttcaagcagt tgttgggaag 4380 atccgagaca gagattgttt tttgcgtagt tgattcagca aaaataggga tggttgattc 4440 ttcttctcgt atctggcggg ttccaggagt ctgagattct agcatcagat tagttaaagt 4500 ctccaagata gccttgcgtt gaattgatgc agcagtgggt acttcattct cagcagaatc 4560 atcataaacc tcaggatggt ctccacgaat tatttctact ttggcatctg tggctctgaa 4620 gatcaagaat gccaacaaga cagaactcag ggcaattgtg aaaagactca cttttaccac 4680 tagttctagt agttttaaaa ttctcatcct agacgtctgc tcagattata atggttatat 4740 gattaatttc aagatgtctg gattaaggtt tttgtttgca ctgattgctc t 4791 //