ID KC261961; SV 1; linear; genomic RNA; STD; VRL; 2977 BP. XX AC KC261961; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-8 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2977 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-2977 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 0581be8e98e4aac623f5e01c9e4a1143. XX CC GenBank Accession Numbers KC261959-KC261961 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-8. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2977 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="Lactuca indica" FT /isolate="TSWV-8" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Sep-2009" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:R9RT47" FT /protein_id="AGM53734.1" FT /translation="MSSSVYKSIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNGRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHQIPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNIQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI FT SEAYDSGSK" FT gene complement(2050..2826) FT /gene="N" FT CDS complement(2050..2826) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q1PBV3" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q1PBV3" FT /protein_id="AGM53735.1" FT /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2977 BP; 954 A; 545 C; 469 G; 1009 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cgcaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttacaagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaacc cagttgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 taatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatgg 540 cagatacatt gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc ctaacagaaa 660 tgtccatgaa tggctgtact gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtaa aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagagttcca aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata atagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcaccagatc ccaattcgta aatgtcaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatc taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtctacca tctaacatac aaactatgtc 1320 ttacttggac agcatccaga tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga tctcggaagc atatgattca ggatcaaaat aatcttgctg 1500 tgtccagctt tccctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tattttgtaa tttcttttga atttctcctg tttaatagaa accataaaaa taaaaataaa 1620 aataaaaata aaaatcaaaa tgaaacaaaa atcaaaaaat gaacaaaaat caaacaaaaa 1680 tcaaaaaatg aaataaaaac aacaaaaaaa ataaaaaaca aaaaaccaaa aaagatcccg 1740 aaagggacaa ttttggccaa atttgggttt tgtttttgtt ttttgttttt tgttttttgt 1800 ttttatttta tttttatttt tatttattta ttttatttta tttttatttt tatttttatt 1860 tttattttca ttttatgttt tttgttgttt ttgttatttt gtttattatt aagcacaaca 1920 cacagaaaac aaactttaat taaacacact tattttaaat ttaacacact aagcaagcac 1980 aagcaataaa gataaagaaa gctttatata tttataggct tttttttata atttaacttg 2040 cagctgcttt taagcaagtt ctgcaagttt tgcctgtttt ttaaccccga acatttcata 2100 gaacttgtta agagtttcac tgtaatgttc catagcaata cttcctttag cattaggatt 2160 gctggagcta agtatagcag catactcttt ccctttcttc acctgatctt cattcatttc 2220 aaatgctttg ctttttagca cagtgcaaac ttttcctagg gcttccctgg tgtcatactt 2280 ttttggatcg atcccgaggt ctttgtattt tgcatcctga tatatagcca agacaacact 2340 gatcatctca aagctatcaa ctgaagcaat aagaggtaag ctacctccca gcattatggc 2400 aagcctcaca gactttgcat catcaagagg taatccatag gcttggatca aagggtgaga 2460 agcaatctta gatttgatag tattgagatt ctcggaattc ccggtttcct cgacaagcct 2520 gaccctgatc aagctatcaa gccttctgaa ggtcatgtca gtggctccaa tcctgtctga 2580 agttttcttt atggtaattt taccaaaagt aaaatcactt tgcttaataa ccttcattat 2640 actctgacga ttcttcagga atgtcagaca tgaaataatg ctcatcttct tgatctggtc 2700 aaggttttcc agacaaaaag tcttgaagtt gaatgctacc agattctgat cttcctcaaa 2760 ttcaagatct ttgctttgtg tcaacaaagc aacaatgttt tccttagtga gcttaacctt 2820 agacatgatg atcgtagaag ttgttatatg ctttgaccgt atgtaattca aggtgcgaaa 2880 gtacaactct gtattccgca gtcgtttctt agggttttaa tgtgatgatt tgtaagactg 2940 agtgttaagg tttgaataaa attgacacaa ttgctct 2977 //