ID KC261958; SV 1; linear; genomic RNA; STD; VRL; 2967 BP. XX AC KC261958; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-7 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2967 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-2967 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 91c54f7db71ee959dcb844290c247b78. XX CC GenBank Accession Numbers KC261956-KC261958 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-7. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2967 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="pepper" FT /isolate="TSWV-7" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Dec-2009" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:F4ZD08" FT /protein_id="AGM53739.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHQIPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI FT SEAYDSGSK" FT gene 2040..2816 FT /gene="N" FT CDS complement(2040..2816) FT /codon_start=1 FT /product="nucleocapsid protein" FT /db_xref="GOA:F4ZD09" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:F4ZD09" FT /protein_id="AGM53740.1" FT /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKHKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2967 BP; 952 A; 550 C; 468 G; 997 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cgcaacactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttacgagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaacc cagttgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 taatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc ctaacagaaa 660 tgtccatgaa tggctgtact gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtaa aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagagttcca aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcaccagatc ccaattcgta aatgtcaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatc taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtctacca tctaacacac aaactatgtc 1320 ttacttagac agcatccaga tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga tctcggaagc atatgattca ggatcaaaat aatcttgctg 1500 tgtccagctt tccctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tattttgtaa tttcttttga atttctcctg tttaatagaa accataaaat aaaaataaaa 1620 ataaaaataa aaatcaaaat gaaacaaaaa tcaaaaaata aacaaaaatc aaacaaaaat 1680 caaaaaatga aataaaaaca acaaaaaata aaaaacaaaa aaccaaaaaa gatcccgaaa 1740 gggacaattt tggccaaatt tgggttttgt ttttgttttt tgtttgtttt ttgtttttac 1800 tttattttca tttttattta tttattttat tttattttta tttttatttt attttatttt 1860 cattttatgt tttttgttgt ttttgttatt ttgtttatta ttaagcacaa cacacagaaa 1920 gcaaacttta attaaacaca cttattttaa atttaacaca ctaagcaagc acaagcaata 1980 aagataaaga aagctttata tatttatagg cttttttata atttaactta cagctgcttt 2040 taagcaagtt ctgcaagttt tgcctgtttt ttaaccccga acatttcata gaacttgtta 2100 agagtttcac tgtaatgttc catagcaata cttcctttag cattaggatt gctggagcta 2160 agtatagcag catactcttt ccctttcttc acctgatctt cattcatttc aaatgctttg 2220 ctttttagca cagtgcaaac ttttcctagg gcttccctgg tgtcatactt ttttggatcg 2280 atcccgaggt ctttgtgttt tgcatcctga tatatagcca agacaacact gatcatctca 2340 aagctatcaa ctgaagcaat aagaggtaag ctacctccca gcattatggc aagcctcaca 2400 gactttgcat catcaagagg taatccatag gcttggatca aagggtgaga agcaatctta 2460 gatttgatag tattgagatt ctcagaattc ccggtttcct cgacaagcct gaccctgatc 2520 aagctatcaa gccttctgaa ggtcatgtca gtggctccaa tcctgtctga agttttcttt 2580 atggtaattt taccaaaagt aaaatcactt tgcttaataa ccttcattat actctgacga 2640 ttcttcagga atgtcagaca tgaaataatg ctcatcttct tgatctggtc aaggttttcc 2700 agacaaaaag tcttgaagtt gaatgctacc agattctggt cttcctcaaa ttcaagatct 2760 ttgctttgtg tcaacaaagc aacaatgttt tccttagtga gcttaacctt agacatgatg 2820 atcgtagaag ttgttatatg ctttgaccgt atgtaattca aggtgcgaaa gtacaactct 2880 gtattccgca gtcgtttctt agggttttaa tgtgatgatt tgtaagactg agtgttaagg 2940 tttgaataaa attgacacaa ttgctct 2967 //