ID KC261957; SV 1; linear; genomic RNA; STD; VRL; 4785 BP. XX AC KC261957; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-7 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4785 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4785 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 65c77c8f852fe8468cad72909d208df1. XX CC GenBank Accession Numbers KC261956-KC261958 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-7. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4785 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="pepper" FT /isolate="TSWV-7" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Dec-2009" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RW89" FT /protein_id="AGM53741.1" FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1294..4701) FT /gene="Gn-Gc" FT CDS complement(1294..4701) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RUW6" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RUW6" FT /protein_id="AGM53742.1" FT /translation="MRFLKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHL FT EVYDDSAENEVLTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTMQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNSTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGAIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTKL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLAIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4785 BP; 1558 A; 849 C; 836 G; 1542 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagtaa 120 taaggggtct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctagtcg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg 600 tcaagggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgacagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagcttaaat ttctgttaat tttgcatttt taaatcaaaa aacaaaacaa 1080 aaacaaaaaa caaaaaaaga aaaacaaaaa acaaaaaaat caaaaaaaga aaaaacaaaa 1140 acaaataagg ctgaaaagcc aaactttggt ccgaagactc tttttgttgt tttttgttta 1200 tttgtatttt ttgtttgttt tttgtttatt ttatatatac ataatctgac taatgtagag 1260 aattgaatca aatttagcct gtgacaagca gcctcagaca aggtgagaga aatccatagg 1320 tggccttcgt cttgtcattg tatctttcat taacataggg gctttgatct cagaatcatc 1380 atcatcctct atcttggatc tagatttata agattcattc ttgacatatc ctttacaaat 1440 ggttgttaga atagaacaga aataaatcgc aaggaaaatg aatgcaataa gcaatatcac 1500 tctgatagta tcaaaaaacg agccaaaata acttgcaatg aaattgaatg ggctcttaat 1560 ataatcccag aagccccatg ctgaagaatc agaattatat tgttgttcct catgagcata 1620 ctcatcattt tgatctatta tgttctctgg ttcttctaca acaacattgt tgaccagaac 1680 ctccacagaa atatctggat tgccttctgg atacaacgtc attttcttct tgtccggatt 1740 agcagaacaa aacattgtta tgttgtattt atttgatcct tttttaacag ccagttgata 1800 agtagataga gagcaagcat ctatagaaat tgaagtagaa aatgtcaaat ccgagaaaaa 1860 ttctaaaatg caagataaac cttgaccgca tagaagacag ccgttgcaat ttaattttgt 1920 tgaagttatg gaaggtctct taggagcaat tttaaaaaga tcagatggaa gatcaacgac 1980 aatcttgagt ttgcctaaac tgaaagcttt ttccaagaaa aaactagaga aatccttgaa 2040 actaacagga atatctgata tttgctctaa accagatcta aatctgtatg tatcatatcc 2100 gcatgtttta atagtgattg attttttccc tattgctgca caatcccaag acatgtcatc 2160 tccttctaga gttttcttag taaaaatagg cactccatca tgagtcaatt gtgggtgacc 2220 aaacattttg acaggatcat tcaagtttgc aatatttcca gaataaatat ggccgtcagg 2280 tccatgagct atcagttcac ctatagtgat accatcattg tgcaaatctg cttgtatatc 2340 agcttgaaac aaagcatttt cataaggaac ctcttcagtg atccttgagc actgacctcc 2400 taaaatacca gaaatacaaa catctgccac tatggttgat tttagcactg aataaattct 2460 gtatgattta tccatgtcat agatattccg acagaatcca catgtagcac cttcattaat 2520 tgcaaaacac caagcttctt cacatcccca ataagaagtt ggtgttatac aaaaatcttg 2580 gaaacctgtt aaagcttgat ttttcctgca agtgtcacag tttcctgtgc aagttgaata 2640 aaaatctgtg tgagtgcttt ggataggagc tgttgtgtat ttttctgaca cttcataatg 2700 aattcccaca cttttgatat aaatcacaaa ttttttggct gtttccgagg ttttatcatt 2760 caacatgaat atagcccctc ctcctcctaa aagagattgt tctatcatgt atctatattt 2820 cccatctaca acagaatcaa agatcaatga ttgtctaggc agaatgttct ctggtatgct 2880 tgtttcattt ttgtttagag agtctcctgc aatcattcca gaaattttgt ctgtactatt 2940 ataagaatct attataccat tcctcaatct cttagcttca tacagaccaa ccgatgtcaa 3000 ccctaaagag cttcctgtat aatccgaaaa tccgttatac aaaggtttgt ttctaaataa 3060 atctaggtat tcgcaaccta atctgcattt tataagatta tcaatagatg ggtgtgcaac 3120 gcaattctgg ttctctatgc aatcattagg accttctata acaatgttag tgccaaagat 3180 actttctata atcgtatctt cttttacatt acagtaacat tgatcttttt cagggcattt 3240 ctcaaatttg cttgtaacca aaaacggaca gcctggaaca taaaaacatc cacttaaaca 3300 ttgggtagtt tgagccatag acatgggcat ttgagacaaa atgaccaaac ctattaagat 3360 ttcagtcaca aatttcagca aactgaagct aagcttagtg ttcactatta gatggaacca 3420 ttccatgcta gtccacttat gtttgttgta gtcatgatct gtttctttgg acaatatggg 3480 acactctgaa gaatgttctt ttgaagcttt gcttttgttg cagatgcaaa ttttagtaca 3540 ttcatgtgtg attatgcaca aattgccaca gttagaacat ttaaatggaa aatatttcca 3600 taagcaattt atgagcaaca aaatagggta tgtgatcaag cctataagat cataccagag 3660 aaaaaggggt ttggttgtct tgtttactaa ccaccggata gggaaataga tcaacaaagc 3720 tatcaatatt aatcttatcc aagaaaaatt gatgcaggct gtttgtttat aaatgctttt 3780 tgaatatttg attatgcaat ctctaactct tttgtttgtt tttggtattt tagctgattt 3840 gtcaccgcac aagagattgt gctcaccatc caacatttcc tcagtaaaag tgatgcttgc 3900 tgatccagaa aaagatatga ccttgtgttc cacattttca ccaggctttt ttatcaaata 3960 acccatgatc ttctcagggc tagtgatgct aacagtatag ggattagcaa agtttgattt 4020 agttattttg cagtcgccag ataacttcac agtttgtaat gatactgttc cattagtagg 4080 gtacgagtta taagttatag gataattatc ttgtgtcagg ctttctgaaa tgaagaattt 4140 tgtcccaact gaaaaatgcc tcttgttgtc aagtttggta ataggaataa ctgggacttt 4200 agagaatctt tttggcagat ttaaagaatt gtcacatttt tctaaacctt ctgctgaatc 4260 agaaacacag gaatatatga caccattatt ttccacttga taataaacat tataagtgga 4320 tatccctttt atctcacatt ttaatgaaga agcattcaag cagttgttgg gaagatccga 4380 gacagagatt gttttttgca tagttgattc agcaaaaata gggatggttg attcttcttc 4440 tcgtatctgg cgggttccag gagtctgaga ttctagcatc agattagtta aagtctccaa 4500 gatagccttg cgttgaattg atgcagcagt gagtacttca ttctcagcag aatcatcata 4560 aacctcaaga tggtctccac gaattatttc tactttggca tctgtggctc tgaagatcaa 4620 gaatgccaac aagacagaac tcagggcaat tgtgaaaaga ctcactttta ccactagttc 4680 tagtagtttt aaaaatctca tcctagacgt ctgctcagat tataatggtt atatgattaa 4740 tttcaagatg tctggattaa ggtttttgtt tgcactgatt gctct 4785 //